View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_11 (Length: 517)
Name: NF17264_low_11
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 28918216 - 28917722
Alignment:
| Q |
1 |
aagtgatatattttcatttgatatggcgtattatgtgatgattgcaggtagtcattccactgcatgagctaaaagcagtgaatccttcatctaatacagc |
100 |
Q |
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| T |
28918216 |
aagtgatatattttcatttgatatggcgtattatgtgatgattgcaggtagtcattccactgcatgagctaaaagcagtgaatccttcatctaatacagc |
28918117 |
T |
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| Q |
101 |
caatcctgctgaaaagtacatccaagtgatctctgtcgacaatcatgaattttggtttatgggcttcttgaactatgataacgctgtgggcttcctgcaa |
200 |
Q |
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| T |
28918116 |
caatcctgctgaaaagtacatccaagtgatctctgtcgacaatcatgaattttggtttatgggcttcttgaactatgataacgctgtgggcttcctgcaa |
28918017 |
T |
|
| Q |
201 |
gatgcacttcaagcaggcaaagtaatacagtcagaagcatagtctgtttatacgttctagtttcaaaccagcaaatatatgtcacgcctttacactatat |
300 |
Q |
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| T |
28918016 |
gatgcacttcaagcaggcaaagtaatacagtcagaagcatagtctgtttatacgttctagtttcaaaccagcaaatatatgtcacgcctttacac--tat |
28917919 |
T |
|
| Q |
301 |
aggcttggaattgttgataaaccagctaatttttggcatttttgttgatatgaatttactgtaggattcataccttggaccatttatggagatcgatcga |
400 |
Q |
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| T |
28917918 |
aggcttggaattgttgataaaccagctaatttttggcatttttgttgatatgaatttactgtaggattcataccttggaccatttatggagttcgatcgg |
28917819 |
T |
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| Q |
401 |
aatagttagaaaagtggtctgtggacattcttgcatgatatgtaacaaaacttgttagcaattatagttggtgaaccatgttttatttcctccgttg |
497 |
Q |
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| T |
28917818 |
aatagttagaaaagtggtctgtggacattcttgcatgatatgtaacaaaacttgttagcaattatagttggtgaactatgttttatttcctccgttg |
28917722 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 46364590 - 46364553
Alignment:
| Q |
129 |
atctctgtcgacaatcatgaattttggtttatgggctt |
166 |
Q |
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||||| || ||||||||||||||||||||||||||||| |
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| T |
46364590 |
atctccgttgacaatcatgaattttggtttatgggctt |
46364553 |
T |
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