View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_12 (Length: 513)
Name: NF17264_low_12
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Complemental strand, 7324914 - 7324435
Alignment:
| Q |
20 |
cgttggaatcacaaaaccctaaacctataattatatctattcactcactcactgtcacattcactcactgtccaagaattgcagtcaaaaccttaaaacc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7324914 |
cgttggaatcacaaaaccctaaacctataattatatctattcactcactcactgtcacattcactcactgaacaagaattgcagtcaaaaccttaaaacc |
7324815 |
T |
|
| Q |
120 |
ctaaccctacatactataaatattatatttgtttctcactttcttgttgaacaattactcataggtttgttggttgcttcttcgatcaacaacacactct |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7324814 |
ctaaccctacatactataaataatatatttgtttctcattttcttgttgaacatttactcataggtttgttggttgcttcttcgatcaacaacacactct |
7324715 |
T |
|
| Q |
220 |
caacaactgtttttcgtttgtgtttccagtcttcttttcataaatcgtaatggcccgtttcgttgacaacccatcattccctgctggtctaagggttatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7324714 |
caacaactgtttttcgtttgtgtttccagtcttcttttcataaatcgtaatggcccgtttcgttgacaacccatcattccctgctggtctaagggttatt |
7324615 |
T |
|
| Q |
320 |
gccattgatcatgacatcattgttcttaacactattgaggatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7324614 |
gccattgatcatgacatcattgttcttaacactattgaggatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaat |
7324515 |
T |
|
| Q |
420 |
tctaaagtgtgtttgttcttattttatgtattttcatgtttgcttgttcatgattgcttatgtatatttttatgtttgtt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7324514 |
tctaaagtgtgtttgttcttattttatgtattttcatgtttgcttgttcatgcttgcttatgtatatttttatgtttgtt |
7324435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 80 - 422
Target Start/End: Original strand, 7243506 - 7243839
Alignment:
| Q |
80 |
tcactcactgtccaagaattgcagtcaaaacctta-aaaccctaaccctacatactataaatattatatttgtttctcactttcttgttgaacaattact |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||||||||||| ||| || |||| |
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| T |
7243506 |
tcactcactgtccaagaattgcagtcaaaaccctagaaaccctaaccctacata------------tatgtgtttctcactttcttgtcgaagaactact |
7243593 |
T |
|
| Q |
179 |
cataggtttgttggttgcttcttcgatcaacaacacactctcaacaactgtttttcgtttgt--gtttccagtcttcttttcataaatcgtaatggcccg |
276 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||| |||| | |||||| |
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| T |
7243594 |
cttagctttgttggttgcttcttcgatcaacaacacactctcaagaactggttttcgtttgtacgtttcctctcttctgactgcaaattgcaatggcttt |
7243693 |
T |
|
| Q |
277 |
tttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgtaatcgatat |
376 |
Q |
| |
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|||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7243694 |
tttcattgacaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcactgttcttaacactattgaggatatgtgtaatcgattc |
7243793 |
T |
|
| Q |
377 |
cattatcaaggttagttactcagttaattgcaccttattcaattct |
422 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
7243794 |
cattatcaaggttagtcactttgttaattgcaccttattcaattct |
7243839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 283 - 467
Target Start/End: Complemental strand, 7317869 - 7317684
Alignment:
| Q |
283 |
tgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgtaatcgatatcattat |
382 |
Q |
| |
|
|||||||||||||||||| || ||||| | ||||||||| |||||||||||||||| | | || ||| |||||||||| |||||||||||||||||||| |
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| T |
7317869 |
tgacaacccatcattcccagccggtctcaaggttattgcaattgatcatgacatcactttcctcaactctattgaggagatgtgtaatcgatatcattac |
7317770 |
T |
|
| Q |
383 |
caaggttagttactcagttaattgcaccttattcaattctaaagtgtgtttgttctta-ttttatgtattttcatgtttgcttgtt |
467 |
Q |
| |
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||||||| |||||| |||||||||||| ||||||||||||||||| | | |||||||| |||||||| |||||||||||| ||||| |
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|
| T |
7317769 |
caaggtttgttacttagttaattgcacattattcaattctaaagtttctatgttcttacttttatgttttttcatgtttgtttgtt |
7317684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 7243462 - 7243517
Alignment:
| Q |
20 |
cgttggaatcacaaaaccctaaacctataattatatctattcactcactcactgtc |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
7243462 |
cgttggaatcacaaaaccctaaacctataaatttatctattcactcactcactgtc |
7243517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 396
Target Start/End: Original strand, 8161916 - 8162044
Alignment:
| Q |
268 |
aatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgt |
367 |
Q |
| |
|
|||| ||| |||| ||||||| ||||||||||| | ||||| ||| |||| |||||||||||||||| | | ||||| | || ||||| |||||| |
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| T |
8161916 |
aatgacccttttcattgacaaaccatcattcccagaaggtctctaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgt |
8162015 |
T |
|
| Q |
368 |
aatcgatatcattatcaaggttagttact |
396 |
Q |
| |
|
||||||| |||||||||||||| |||| |
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| T |
8162016 |
aatcgatgcaattatcaaggttaggtact |
8162044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 266 - 417
Target Start/End: Complemental strand, 22766687 - 22766536
Alignment:
| Q |
266 |
gtaatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgt |
365 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||||| |||||| | |||||||| ||||||||||||| || | | |||||||| |||||||| |||| |
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| T |
22766687 |
gtaatggccgttttcatcgacaacccatcattccctgatggtctcaacgttattgcaattgatcatgacaccactttccttaacaccattgaggagatgt |
22766588 |
T |
|
| Q |
366 |
gtaatcgatatcattatcaaggttagttactcagttaattgcaccttattca |
417 |
Q |
| |
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||||||||| ||||||||||||||||||||| || |||| ||||||||||| |
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|
| T |
22766587 |
gtaatcgatgtcattatcaaggttagttacttggtaaattacaccttattca |
22766536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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