View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_13 (Length: 500)
Name: NF17264_low_13
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Complemental strand, 8694650 - 8694181
Alignment:
| Q |
13 |
aaaattgcaattagctaaaattttgagaaatcacggtgaattaaatatatgcactataacttattttgtccgttgatttacaatcagatggctcaaattt |
112 |
Q |
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| T |
8694650 |
aaaattgcaattagctaaaattttgagaaatcacggtgaattaaatatatgcactataacttattttgtccgttgatttacaatcagatggctcaaattt |
8694551 |
T |
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| Q |
113 |
caactcggtctcgcacaaatattacaacagaaaatctcatttccgagacacaacacaagtcattgtttccattattgctaatatattgaacttgcacttt |
212 |
Q |
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| T |
8694550 |
caactcggtctcgcacaaatattacaacagaaaatctcatttccgagacacaacacaagtcattgtttccattattgctaatatattgaacttgcacttt |
8694451 |
T |
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| Q |
213 |
gaacaagtcaataaacaatgataatttgctctggtcttttcctatgagaagcaaaatattaacgtgtgccaaaagaaagagctgaatattaatgtcatta |
312 |
Q |
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| T |
8694450 |
gaacaagtcaataaacaatgataatttgctctggtcttttcctatgagaagcaaaatattaacgtgtgccaaaagaaagagctgaatattaatgtcatta |
8694351 |
T |
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| Q |
313 |
tcaatttagactgcttgtaatttgctttgttttggtggtttgttatgctccccactagcatagttagtcacatcatcttactctaagattgatctaattc |
412 |
Q |
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| T |
8694350 |
tcaatttagactgcttgtaatttgctttgttttggtggtttgttatgctccccactagcatagttagtcacatcatcttactctaagattgatctaattc |
8694251 |
T |
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| Q |
413 |
atcttactttaactggattcatttaaagtgttgatttcttttgatacgcattttttcataccgacaagag |
482 |
Q |
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| T |
8694250 |
atcttactttaactggattcatttaaagtgttgatttcttttgatacgcattttttcataccgacaagag |
8694181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 236 - 414
Target Start/End: Complemental strand, 8701754 - 8701563
Alignment:
| Q |
236 |
atttgctctggtcttttcctatgagaagcaaaatattaacgtgtgccaaaagaaagagctgaatattaat----gtcattatcaatttagactgcttgta |
331 |
Q |
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| T |
8701754 |
atttgatctggtctcttcctatcagaagcagaatattaacatgtaccaaaagaaagagctgaatattaattaatgtcattatcaaattaaactgcttgaa |
8701655 |
T |
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| Q |
332 |
atttgctttgttttggtggtt----tgttatgctccccactagcatagttagtcacatcatct-----tactctaagattgatctaattcat |
414 |
Q |
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| T |
8701654 |
atttgctttgttttggtggttggtttgttatgctccccactaacgtagttagtcacatcatctcatcttagtctaagattgagctaattcat |
8701563 |
T |
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