View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17264_low_14 (Length: 473)

Name: NF17264_low_14
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17264_low_14
NF17264_low_14
[»] chr3 (3 HSPs)
chr3 (125-473)||(54591999-54592348)
chr3 (36-109)||(54591380-54591453)
chr3 (122-151)||(17105273-17105302)
[»] chr6 (2 HSPs)
chr6 (122-166)||(10338605-10338649)
chr6 (122-159)||(1960348-1960385)
[»] chr8 (5 HSPs)
chr8 (101-151)||(3943761-3943811)
chr8 (122-151)||(10440384-10440413)
chr8 (122-150)||(8431282-8431310)
chr8 (123-151)||(12170604-12170632)
chr8 (123-151)||(12415032-12415060)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 125 - 473
Target Start/End: Original strand, 54591999 - 54592348
Alignment:
Q  125 ttcaatcacttttattttcttaaattactaacaatgtttacatgttggcgtccgtgccatgtatgtgtaaaatgtaaatgcttcataggttactaatgct 224  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54591999 ttcaatcacttttattttctcaaattactaacaatgtttacatgtcggcgtccgtgccatgtatgtgtaaaatgtaaatgcttcataggttactaatgct 54592098  T
Q  225 tgtttaaaaggaatttcacaatttcacttcaactagacaaaacaagtatctgaaattggggtggtcataatcagccaccactggtgctatacgttgaact 324  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54592099 tgtttaaaaggaattttacaatttcacttcaactagacaaaacaagtatctgaaattggggtggtcataatcagccaccactggtgctatacgttgaact 54592198  T
Q  325 agtaaaaagtgcagactatgttattttattcagttctcagatttttggaattggtttttcggatcttttctcccaattactacattccaaaaggatctag 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54592199 agtaaaaagtgcagactatgttattttattcagttctcagatttttggaattggtttttcggatcttttctcccaattactacattccaaaaggatctag 54592298  T
Q  425 ctggctatctgaaacatgtgaataaatataccaaa-ttcatctgctatct 473  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  54592299 ctggctatctgaaacatgtgaatacatataccaaatttcatctgctatct 54592348  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 54591380 - 54591453
Alignment:
Q  36 attttcttatcttcaaggttcctatcacatgtccaatgttcaacacgctttggtgttagaggccgacacaatac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54591380 attttcttatcttcaaggttcctatcacatgtccaatgttcaacacgctttggtgttagaggccgacacgatac 54591453  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 151
Target Start/End: Complemental strand, 17105302 - 17105273
Alignment:
Q  122 acattcaatcacttttattttcttaaatta 151  Q
    ||||||||||||||||||||||||||||||    
T  17105302 acattcaatcacttttattttcttaaatta 17105273  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 10338649 - 10338605
Alignment:
Q  122 acattcaatcacttttattttcttaaattactaacaatgtttaca 166  Q
    |||||||||||||| ||||||||||||||| || |||||||||||    
T  10338649 acattcaatcacttctattttcttaaattattatcaatgtttaca 10338605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 1960348 - 1960385
Alignment:
Q  122 acattcaatcacttttattttcttaaattactaacaat 159  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  1960348 acattcaatcactttcattttcttaaattactaccaat 1960385  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 3943811 - 3943761
Alignment:
Q  101 acacaatacaaacataccgtgacattcaatcacttttattttcttaaatta 151  Q
    ||||||||| |||||   || ||||||||||||||||||||||||||||||    
T  3943811 acacaatactaacatgtggttacattcaatcacttttattttcttaaatta 3943761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 151
Target Start/End: Complemental strand, 10440413 - 10440384
Alignment:
Q  122 acattcaatcacttttattttcttaaatta 151  Q
    ||||||||||||||||||||||||||||||    
T  10440413 acattcaatcacttttattttcttaaatta 10440384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 8431282 - 8431310
Alignment:
Q  122 acattcaatcacttttattttcttaaatt 150  Q
    |||||||||||||||||||||||||||||    
T  8431282 acattcaatcacttttattttcttaaatt 8431310  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 12170632 - 12170604
Alignment:
Q  123 cattcaatcacttttattttcttaaatta 151  Q
    |||||||||||||||||||||||||||||    
T  12170632 cattcaatcacttttattttcttaaatta 12170604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 12415060 - 12415032
Alignment:
Q  123 cattcaatcacttttattttcttaaatta 151  Q
    |||||||||||||||||||||||||||||    
T  12415060 cattcaatcacttttattttcttaaatta 12415032  T

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