View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_16 (Length: 468)
Name: NF17264_low_16
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 17774759 - 17774547
Alignment:
| Q |
18 |
acaaggaggatgaatccggaattggcgtgttagtgggttacaagcgatgagggatgtcgtggttagagtttgggagattggactattgttgataccttct |
117 |
Q |
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| T |
17774759 |
acaaggaggatggatccggaattggcgtgttagtgggttacaagagacgagggatgtcgtggttagagtttgggagattggactattgttaataccttct |
17774660 |
T |
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| Q |
118 |
gcccaaaggtagatgagtccatcagaggaagctaccggaagaagggaagagaaagggagaaaattgatgcgaaaatggatccaatcatttaggtcaagat |
217 |
Q |
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| T |
17774659 |
gcccaaaggtagatgagtccatcagaggaagctactggaagaagggaagagaaagggagaaagttgaggggaaaatggatccaatcatttaggtcaagat |
17774560 |
T |
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| Q |
218 |
cgaagaaacggag |
230 |
Q |
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| T |
17774559 |
cgaagaaacggag |
17774547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 12225391 - 12225482
Alignment:
| Q |
118 |
gcccaaaggtagatgagtccatcagaggaagctaccggaagaagggaagagaaagggagaaaattgatgcgaaaatggatccaatcatttag |
209 |
Q |
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| T |
12225391 |
gcccaaaggtagatgagtccatgagatgaagcaactggaagaggagaagagaaagggaggaagttgagaggaaaatgaagccaatgatttag |
12225482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 9324322 - 9324276
Alignment:
| Q |
320 |
tgtatatccattttatagaataatatcagcttatgtgtcaccaactg |
366 |
Q |
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| T |
9324322 |
tgtatatccattttatagaataatatcagcttatgtgtcaccaactg |
9324276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 9324233 - 9324181
Alignment:
| Q |
314 |
taactctgtatatccattttatagaataatatcagcttatgtgtcaccaactg |
366 |
Q |
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||||| |||||||||||| | ||||| ||||||| |||||||||||||||||| |
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| T |
9324233 |
taactttgtatatccattatgtagaaaaatatcatcttatgtgtcaccaactg |
9324181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 9324531 - 9324479
Alignment:
| Q |
314 |
taactctgtatatccattttatagaataatatcagcttatgtgtcaccaactg |
366 |
Q |
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||||| |||||||||||| | ||||| ||||||| |||||||||||||||||| |
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| T |
9324531 |
taactttgtatatccattctgtagaaaaatatcatcttatgtgtcaccaactg |
9324479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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