View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_17 (Length: 467)
Name: NF17264_low_17
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_17 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 45413197 - 45412754
Alignment:
| Q |
7 |
gagatgaaaagaaagaatagcattaaatcttgcgttgcatcctcaaatctcacaaatgatattcactcacaagtttttccttacttttcttcttggcaaa |
106 |
Q |
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| T |
45413197 |
gagatgaaaagaaagaatagcattaaatcttgcgttgcatcctcaaatctcacaaatgatattcactcacaagtttttccttacttttcttcttggcaaa |
45413098 |
T |
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| Q |
107 |
aatcattcggtaagtcttcccattgttctaaattgtggcagcagtcacggttacttagttgattttaaattgaccaaaaccttaatattacagcaaaaat |
206 |
Q |
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| T |
45413097 |
aatcattcggtaagtctccccattgttctaaattgtggcagcagtctgggttacttagttgattttatattgaccaaaaccttaatattacagcaaaaag |
45412998 |
T |
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| Q |
207 |
catgcaaatatagttggtgcaactataataccgtaacaaaaacctttttaacatggaaactcaatcttaattatgagaataatttttgtttgtgtaggta |
306 |
Q |
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| T |
45412997 |
catgcaaatatagttggtgcaactataataccgtaacaaaaacctttttaacatagaaactcaatcttaattatgagaataatttttgtttgtgtaggta |
45412898 |
T |
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| Q |
307 |
aggtgttcatttactggctaggtacagaaccatttttgtacattgcgaatgcagaattcttgaagaaaatgtcaacagaagtgatggcaaagagatgggg |
406 |
Q |
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| T |
45412897 |
aggtgttcatttactggctaggtacagaaccatttttgtacattgcgaatgcagaattcttgaagaaaatgtcaacagaagtgatggcaaagagatgggg |
45412798 |
T |
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| Q |
407 |
aaagccaagtgtttttagaaatgatagagatcccatgtttggaa |
450 |
Q |
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| T |
45412797 |
aaagccaagtgtttttagaaatgatagagatcccatgtttggaa |
45412754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 267 - 450
Target Start/End: Complemental strand, 45422340 - 45422157
Alignment:
| Q |
267 |
tcaatcttaattatgagaataatttttgtttgtgtaggtaaggtgttcatttactggctaggtacagaaccatttttgtacattgcgaatgcagaattct |
366 |
Q |
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| T |
45422340 |
tcaatcttaataatgaaaataatttttgtttgtgcaggtaaggtgttcatttactggctaggtacggaaccatttttgtacattgcgggtgcagaattct |
45422241 |
T |
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| Q |
367 |
tgaagaaaatgtcaacagaagtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagatcccatgtttggaa |
450 |
Q |
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| T |
45422240 |
tgaagaaaatgtcaacagaggtgatggcaaagagatgggggaagccaagtgtttttagaaatgatagagaacctatgtttggaa |
45422157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 306 - 450
Target Start/End: Complemental strand, 29801993 - 29801849
Alignment:
| Q |
306 |
aaggtgttcatttactggctaggtacagaaccatttttgtacattgcgaatgcagaattcttgaagaaaatgtcaacagaagtgatggcaaagagatggg |
405 |
Q |
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| T |
29801993 |
aaggttttcatctattggctaggcgcagaaccttttctctacattgcagaccctgaattcttgaagaaaatgtccactgaagttattgcaaagagatggg |
29801894 |
T |
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| Q |
406 |
gaaagccaagtgtttttagaaatgatagagatcccatgtttggaa |
450 |
Q |
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| T |
29801893 |
gaaaaccaaatgtgtttagaaatgatagagagcccatgtttggaa |
29801849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 26829908 - 26829687
Alignment:
| Q |
22 |
aatagcattaaatcttgcgttgcatcctcaaatctcacaaatgatattcactcacaagtttttccttacttttcttcttggcaaaaatcattcggtaagt |
121 |
Q |
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| T |
26829908 |
aatagcattaaatcttgcgttgcatcttcaaatctcacaaatgatattcgctcacaagtttttccttacttttcttcttggcaaaaatcattcggtaagt |
26829809 |
T |
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| Q |
122 |
cttcccattgttctaaattgtggcagcagtcacggttacttagttgattttaaattgaccaaaaccttaatattacagcaaaaatcatgcaaatatagtt |
221 |
Q |
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| T |
26829808 |
ctccccattgttctaaattgtggcagcagtcacggttacgtagttgattttaaattgaccaaaaccttaatattacagcaaaaagcatgcaaatatagtt |
26829709 |
T |
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| Q |
222 |
ggtgcaactataataccgtaac |
243 |
Q |
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| T |
26829708 |
ggtgcaactacaataccgtaac |
26829687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 267 - 448
Target Start/End: Complemental strand, 26837192 - 26837011
Alignment:
| Q |
267 |
tcaatcttaattatgagaataatttttgtttgtgtaggtaaggtgttcatttactggctaggtacagaaccatttttgtacattgcgaatgcagaattct |
366 |
Q |
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| T |
26837192 |
tcaatcttaataatgaaaataatttttgtttttgcaggtaaggtgttcatttactggctaggtacggaaccttttttgtacattgcgggtgcagaattct |
26837093 |
T |
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| Q |
367 |
tgaagaaaatgtcaacagaagtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagatcccatgtttgg |
448 |
Q |
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| T |
26837092 |
tgaagaaaatgtcaacagacgtgatggcaaagagatggggaaaacctaatgtttttagaaatgacagagatcccatgtttgg |
26837011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 450
Target Start/End: Complemental strand, 66359 - 66269
Alignment:
| Q |
360 |
gaattcttgaagaaaatgtcaacagaagtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagatcccatgtttggaa |
450 |
Q |
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| T |
66359 |
gaattcttgaagaaaatgtccacaaaggttttggccaagacatggggaaaacctagtgtgtttagaaaagacagggatcccatgtttggaa |
66269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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