View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_2 (Length: 716)
Name: NF17264_low_2
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Original strand, 41221543 - 41222269
Alignment:
| Q |
1 |
accactactcttcagatattgttctgctactcccactgttacatcatcttcatgcaaccgcaattcttccatctacatcaaagccacataagaatcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41221543 |
accactactcttcagatattgttctgctactcccactgttacatcatcttcatgcaaccgcaattcttccatctacatcaaagccacataagaatcaaaa |
41221642 |
T |
|
| Q |
101 |
ccctttcaactcaatcaatagtcatttatataatgtgatcttcataatgtcactgttataactgaaaagcacttgtgcaaattgtgtcattagaagatta |
200 |
Q |
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| T |
41221643 |
ccctttcaactcaatcaatagtcatt-atataatgtgatcttcataatgtcactgttataactgaaaagcacttgtgcaaattgtgtcattagaagatta |
41221741 |
T |
|
| Q |
201 |
taatatgtatttatttctgtcattttccagcttgtcnnnnnnntaaatttac--------------attatacagaagattaaaatattaaataacataa |
286 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41221742 |
taatatgtatttatttctgtcattttccagcttgtcaaaagaataaatttactaaagcaaatttacattatacagaagattaaaatattaaataacataa |
41221841 |
T |
|
| Q |
287 |
gannnnnnnnnnng--aagaaattaaataacattagatttacttgtacaaactatggtgtgacacatttaaccgaatgtgcaatccttacatgcttacaa |
384 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41221842 |
gatttttttttttttaaagaaattaaataacataagatttacttgtacaaactatggtgtgacacatttaaccgaatgtgcaatccttacatgcttacaa |
41221941 |
T |
|
| Q |
385 |
tttcaaagacgtttgctctcacattgatgttgaaaatgaagaaagcaacaaaatgaatcagtaatatttacccagaaatcgacttcgtcttcatctctga |
484 |
Q |
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| T |
41221942 |
tttcaaagacgtttgctctcacattgatgttgaaaatgaagaaagcaacaaaatgaattagtaatatttacccagaaatcgacttcgtcttcatctctga |
41222041 |
T |
|
| Q |
485 |
ttaaacatggagccttaggaatctctgtgggctcgtcattacgtgcaaacctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcata |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41222042 |
ttaaacatggagccttaggaatctctgtgggctcgtcattgcgtgcaaacctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcata |
41222141 |
T |
|
| Q |
585 |
ctataaaaacaacacattcagactcttctctttctaatcaaactttgttaat----------tatagtatagtataaattctctaatgatcttgattacc |
674 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41222142 |
ctataaaaacaacacattcagactcttctctttctaatcaaactttgttaattatagtatagtatagtatagtataaattctctaatgatcttgattacc |
41222241 |
T |
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| Q |
675 |
ttaatggtcttgttaaagttcctctgtg |
702 |
Q |
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| T |
41222242 |
ttaatggtcttgttgaagttcctctgtg |
41222269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 586
Target Start/End: Complemental strand, 2637116 - 2637053
Alignment:
| Q |
523 |
ttacgtgcaaacctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcatact |
586 |
Q |
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|||||||| || |||||||||| ||||| |||||||||||||||||||||||| |||||||||| |
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| T |
2637116 |
ttacgtgcgaatctgccacgtatgcgtgttcgattgtctgctagtgtctttcggcatgcatact |
2637053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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