View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_21 (Length: 417)
Name: NF17264_low_21
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 11263341 - 11263746
Alignment:
| Q |
14 |
gaacaccaatcaaggtgaacaactgataaggtccgtgagataagatgcgggccaaggtgaacaaccaacatggtctatggtttagaagtacacacagacc |
113 |
Q |
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| T |
11263341 |
gaacaccaatcaaggtgaacaactgataaggtccgtgagataagatgcgggccaaggtgaacaaccaacatggtctatggtttagaagtacacacagacc |
11263440 |
T |
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| Q |
114 |
aaaatgtgaacaaccggaatggtctttggcataaatccactaaaggataagctctacagctgtccttcaaaggacaatagtcgttcgtaaatggagcacg |
213 |
Q |
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| T |
11263441 |
aaaatgtgaacaaccggaatggtctttggcataaatccac----------------cagctgtccttcaaaggacaatagttgttcgtaaatggagcacg |
11263524 |
T |
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| Q |
214 |
attgtcctttcgagacaactgtgcatgcaaaggtacaaggacctaaaccctaatcctactataactactagctcttaagcctaggaccatgtatgttctc |
313 |
Q |
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| T |
11263525 |
attgtcctttcgagacaactgtgcatgcaaaggtacaaggacctaaaccctaatcctactataaatactagctcttgagcctaggaccatgtatgttctc |
11263624 |
T |
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| Q |
314 |
tatttactacacaaacctatcgtcatgtactca------------------cacgtgcaggtacaccactctcattagcctggagaagaaggccgagggc |
395 |
Q |
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| T |
11263625 |
tatttactacacaaacctatcgtcatgtactcactgacttgagcgttggagcacgtgcaggtacaccactctcattcgcctggagaagaaggccgagggc |
11263724 |
T |
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| Q |
396 |
aacagagaagaaggcaacaatt |
417 |
Q |
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| T |
11263725 |
aacggagaagaaggcaacaatt |
11263746 |
T |
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