View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_22 (Length: 406)
Name: NF17264_low_22
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 2745545 - 2745150
Alignment:
| Q |
11 |
agatgaagatgaaagaaactacactgagaatgtcaaagcttgacatacttgcaggagggatgtgaaaagtggaaattttagtctccattgcagcaccttg |
110 |
Q |
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| T |
2745545 |
agatgaagatgaaggaaactacactgagaatgtcaaagcttgacatacttgcaggagggatgtgaaaagtggaaattttagtctccattgcagcaccttg |
2745446 |
T |
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| Q |
111 |
ttccacaaagagtgatgccatttgactgaagacaacagagaataatatagtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctact |
210 |
Q |
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| T |
2745445 |
ttccacaaagagtgatgccatttgactgaagacaacagagaataatatagtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctact |
2745346 |
T |
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| Q |
211 |
tgtgtcacagttgatagaaaccatggactgcatttattttcttccatttgcttcaaatcttttggtgtaataaatgctgctttatctaaaaacctagcaa |
310 |
Q |
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| T |
2745345 |
tgtgtcacagttgatagaaaccatggactgcatttattttcttccatttgcttcaaatcttttggtgtaataaatgctgctttatctaaaaacctagcaa |
2745246 |
T |
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| Q |
311 |
aattaggttaaattccattagtgacaattcatcatcaaaattgaacctatacaaaacataataatcaagactaaaatataaagccatgtgattatt |
406 |
Q |
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| T |
2745245 |
aattaggttaaattccattagtgacaattcatcatcaaaattgaacctatacaaaacataataatcaagactaaaatataaagtcatgtgattatt |
2745150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 40743850 - 40743734
Alignment:
| Q |
96 |
cattgcagcaccttgttccacaaagagtgatgccatttgactgaagacaacagagaataatatagtgcataaccaaattgggagtaatcttaatatgcat |
195 |
Q |
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| T |
40743850 |
cattgcagcaccttgctccacaaaaagggaagccatctgagtgaaaactactgagtagattattgtgcaaagccaaattggaagaagtcttagtatgcat |
40743751 |
T |
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| Q |
196 |
ttcacttcttctacttg |
212 |
Q |
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| T |
40743750 |
tttacttcttcaacttg |
40743734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 8469791 - 8469730
Alignment:
| Q |
160 |
gtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctacttgtgtcacagt |
221 |
Q |
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| T |
8469791 |
gtgcataaccaaactggcaatagtctcaaaatacatttcacttcttcaacttgtgtcacagt |
8469730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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