View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_25 (Length: 389)
Name: NF17264_low_25
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 23031213 - 23031585
Alignment:
| Q |
1 |
tattataataatttctaaatttctaaatagcatacattttagtacgctcattgtttaatatctcagaatcagacataacaactgaaactgaaaaagacct |
100 |
Q |
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| T |
23031213 |
tattataataatttctaaatttctaaatagcatacattttagtacgctcattgtttaatatctcagaatcagacataacaactgaaactgaaaaagacct |
23031312 |
T |
|
| Q |
101 |
tgacctacttcccattgaagattttcgtatacttgaagcttcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggta |
200 |
Q |
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| T |
23031313 |
tgacctacttcccattgaagattttcgtatacttgaagcttcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggta |
23031412 |
T |
|
| Q |
201 |
gtcccaataatagttaccccaattgcaagccatctttgttttttacccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031413 |
gtcccaataatagttaccccaattgcaagccatctttgttttttccccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagcta |
23031512 |
T |
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| Q |
301 |
cccacattagtttgttaataatagccatcatttgtttctttgctttgctttcaacaacaactattgatgtttg |
373 |
Q |
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| T |
23031513 |
cccacattagtttgttaataatagccatcatttgtttctttgctttgctttcaacaacaactattgatgtttg |
23031585 |
T |
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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 141 - 361
Target Start/End: Original strand, 41064919 - 41065139
Alignment:
| Q |
141 |
tcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggtagtcccaataatagttaccccaattgcaagccatctttgtt |
240 |
Q |
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| T |
41064919 |
tcaattcgatgcttaatgacccaataacacatagttcccaaagttgtagccattatagttgctcctataatggtaacaaaaattgccaaccatttttctt |
41065018 |
T |
|
| Q |
241 |
ttttacccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagctacccacattagtttgttaataatagccatcatttgtttctt |
340 |
Q |
| |
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|| || ||||| | ||||||||| || ||||||| |||||| |||||||||||||| | ||||||||| || ||||| |||||| |||||||||||| |
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| T |
41065019 |
cctttccaacaacaacaaatgacaatgctaaaaatgccacagaaataagcacacaagccaaccacattagcttattaattatagccgccatttgtttctt |
41065118 |
T |
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| Q |
341 |
tgctttgctttcaacaacaac |
361 |
Q |
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|||||||||||| | |||||| |
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| T |
41065119 |
tgctttgctttcgataacaac |
41065139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 354
Target Start/End: Original strand, 40420534 - 40420615
Alignment:
| Q |
273 |
aatgacacagatataagcacacaagctacccacattagtttgttaataatagccatcatttgtttctttgctttgctttcaa |
354 |
Q |
| |
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|||| |||||| || | |||||| |||| |||||||| ||||| |||| |||| |||||||||||||||||| ||||||| |
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| T |
40420534 |
aatgccacagaaattaacacacatgctatccacattaacttgtttataacagccgtcatttgtttctttgcttccctttcaa |
40420615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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