View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17264_low_3 (Length: 715)

Name: NF17264_low_3
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17264_low_3
NF17264_low_3
[»] chr1 (3 HSPs)
chr1 (1-702)||(8660773-8661456)
chr1 (294-348)||(29413371-29413426)
chr1 (312-350)||(31789371-31789409)
[»] chr4 (11 HSPs)
chr4 (306-367)||(35565083-35565144)
chr4 (300-367)||(52827264-52827332)
chr4 (305-359)||(33797146-33797201)
chr4 (317-367)||(3055787-3055837)
chr4 (317-364)||(7198036-7198083)
chr4 (300-367)||(26806515-26806581)
chr4 (297-367)||(56511301-56511372)
chr4 (297-367)||(56511508-56511579)
chr4 (317-367)||(16051012-16051062)
chr4 (317-367)||(28497264-28497314)
chr4 (297-365)||(10390504-10390573)
[»] chr2 (1 HSPs)
chr2 (315-367)||(26847290-26847342)
[»] chr3 (2 HSPs)
chr3 (320-367)||(1715389-1715436)
chr3 (297-367)||(35011868-35011939)
[»] chr7 (10 HSPs)
chr7 (317-367)||(36237806-36237856)
chr7 (297-367)||(16565102-16565173)
chr7 (297-367)||(16600489-16600560)
chr7 (297-359)||(29646076-29646139)
chr7 (298-359)||(10903514-10903576)
chr7 (294-359)||(47856017-47856083)
chr7 (317-367)||(48114001-48114051)
chr7 (300-341)||(30296659-30296700)
chr7 (300-348)||(37272077-37272126)
chr7 (300-348)||(43288287-43288336)
[»] chr8 (3 HSPs)
chr8 (300-359)||(34248371-34248431)
chr8 (321-367)||(1067681-1067727)
chr8 (300-348)||(34248100-34248149)
[»] chr5 (4 HSPs)
chr5 (320-367)||(395371-395418)
chr5 (297-359)||(29008084-29008147)
chr5 (297-367)||(39268022-39268093)
chr5 (317-359)||(29432424-29432466)
[»] chr6 (1 HSPs)
chr6 (300-357)||(31905-31963)


Alignment Details
Target: chr1 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Original strand, 8660773 - 8661456
Alignment:
Q  1 gtttttatctctcatttcattgataatagggtagcattcattgtaaaagtttaccggcatgaataacgattttggtcatctccccnnnnnnnaatgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  8660773 gtttttatctctcatttcattgataatagggtagcattcattgtaaaagtttaccggcatgaataacgattttggtcatctcccctttttttaatgatta 8660872  T
Q  101 tgggagattagaatgtaacacggcaacctttctttctcattacaagatgatctatgttcttnnnnnnnnnnnnntctatatactaagaatcttaaaaaat 200  Q
    |||||||    ||||||||||||||||||||||||||||||||||||||||| ||                   ||||||| ||||||||||||||||||    
T  8660873 tgggaga----aatgtaacacggcaacctttctttctcattacaagatgatcaat--------------aaaaatctatatgctaagaatcttaaaaaat 8660954  T
Q  201 acgaacatagatgccaaatatcatcgggaaatatgtctttgtccgcctaccaccgcataactaactgataagagtttataaagagaattgataggctcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8660955 acgaacatagatgccaaatatcatcgggaaatatgtctttgtccgcctaccactgcataactaactgataagagtttataaagagaattgataggctcat 8661054  T
Q  301 aagttgaggaatgcctctctttataaactcatatcaagagtcctatctttccaatgtggtacttgggnnnnnnnccaatatttgtcaacggtactacgac 400  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  8661055 aagttgaggagtgcctctctttataaactcatatcaagagtcctatctttccaatgtggtacttgggtttttttccaatatttgtcaacggtactacgac 8661154  T
Q  401 catttgaagaaattgagaaaatagtaatcagttttgattatcaattgtgtgctttgttatggaagcattttgaacacaacatcttagcaaacataataag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8661155 catttgaagaaattgagaaaatagtaatcagttttgattatcaattgtgtgctttgttatggaagcattttgaacacaacatcttagcaaacataataag 8661254  T
Q  501 ttttcaaacctgttatatggtggggaaaaagggtcaaagtgtctttgccaacgatattcaaaagttctacaacactacatagaattggccactcttaaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8661255 ttttcaaacctgttatatggtggggaaaaagggtcaaagtgtctttgccaacgatattcaaaagttctacaacactacatagaattggccactcttaaat 8661354  T
Q  601 aatattaccatgatatgctttcgtatgtttctaagaagctattctgttcacttctggtcccactctaagttatataaagaggttgtttgctcctcacagg 700  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  8661355 aatattaccatgatatgctttcgtatgtttctaagaagctattcagttcacttctggtcccactctaagtcatataaagaggttgtttgctcctcccagg 8661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 29413426 - 29413371
Alignment:
Q  294 ggctcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatct 348  Q
    |||||||||| |||||| |||||| ||||||||||||| ||||||||||| |||||    
T  29413426 ggctcataaggtgaggagtgcctcctctttataaactcttatcaagagtcttatct 29413371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 31789409 - 31789371
Alignment:
Q  312 tgcctctctttataaactcatatcaagagtcctatcttt 350  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  31789409 tgccactctttataaactcttatcaagagtcctatcttt 31789371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 35565144 - 35565083
Alignment:
Q  306 gaggaatgcctctctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||| |||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||    
T  35565144 gaggattgcctctcattataaactcatatcaagagtcctatctatccaacgtgggacttggg 35565083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 52827264 - 52827332
Alignment:
Q  300 taagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    |||| |||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||  |||||||    
T  52827264 taaggtgaggagtgcctcctctttataaactcttatcaagagtcctatctatccaatgtgagacttggg 52827332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 33797146 - 33797201
Alignment:
Q  305 tgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtgg 359  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  33797146 tgaggagtgcctcgtctttataaactcttatcaagagtcctatctatccaatgtgg 33797201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 3055837 - 3055787
Alignment:
Q  317 ctctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||||||||||  |||||||||||||||| |||||||||| |||||||    
T  3055837 ctctttataaactctcatcaagagtcctatctatccaatgtgggacttggg 3055787  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 7198036 - 7198083
Alignment:
Q  317 ctctttataaactcatatcaagagtcctatctttccaatgtggtactt 364  Q
    |||||||||||||| ||||||||||| ||||| |||||||||| ||||    
T  7198036 ctctttataaactcttatcaagagtcttatctatccaatgtgggactt 7198083  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 26806581 - 26806515
Alignment:
Q  300 taagttgaggaatgcctctctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||||||| || ||||||| |||||||| ||||||||||||||||| ||| || ||| |||||||    
T  26806581 taagttgaggagtgtctctctt-ataaactcttatcaagagtcctatctatccgatttgggacttggg 26806515  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 56511372 - 56511301
Alignment:
Q  297 tcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||| |||||| |||||| ||||||||||||| ||||||||||| |||||   |||||||| |||||||    
T  56511372 tcataaggtgaggagtgcctcctctttataaactcttatcaagagtcttatctactcaatgtgggacttggg 56511301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 56511579 - 56511508
Alignment:
Q  297 tcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||| |||||| |||||| ||||||||||||| ||||||||||| |||||   |||||||| |||||||    
T  56511579 tcataaggtgaggagtgcctcctctttataaactcttatcaagagtcttatctactcaatgtgggacttggg 56511508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 16051062 - 16051012
Alignment:
Q  317 ctctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    |||||||||||||| ||||||||||||||| ||| | |||||| |||||||    
T  16051062 ctctttataaactcttatcaagagtcctatattttctatgtgggacttggg 16051012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 28497264 - 28497314
Alignment:
Q  317 ctctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    |||||||||||||| ||||||||||| ||||| ||| |||||| |||||||    
T  28497264 ctctttataaactcttatcaagagtcttatctatccgatgtgggacttggg 28497314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 10390504 - 10390573
Alignment:
Q  297 tcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtggtacttg 365  Q
    ||||||| ||||||||| ||| ||||||||||||  ||||||||| | ||||| |||||||||| |||||    
T  10390504 tcataaggtgaggaatgtctcctctttataaactattatcaagagacttatctatccaatgtgggacttg 10390573  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 26847290 - 26847342
Alignment:
Q  315 ctctctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  26847290 ctctctttataaactcttatcaagagtcctatctatccaatgtgggacttggg 26847342  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 1715436 - 1715389
Alignment:
Q  320 tttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  1715436 tttataaactcatatcaagagtcctatttttcaaatgtgggacttggg 1715389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 35011939 - 35011868
Alignment:
Q  297 tcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||| |||||| |||||| ||||||||||||| ||||||||||| |||||   |||||||| |||||||    
T  35011939 tcataaggtgaggagtgcctcctctttataaactcttatcaagagtcttatctactcaatgtgggacttggg 35011868  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 36237856 - 36237806
Alignment:
Q  317 ctctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    |||||||||||||| ||||||||||||||| | |||||||||| |||||||    
T  36237856 ctctttataaactcttatcaagagtcctatgtatccaatgtgggacttggg 36237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 16565173 - 16565102
Alignment:
Q  297 tcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||| |||||| |||||| | ||||||||||| ||||||||||| ||||| ||| |||||| |||||||    
T  16565173 tcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgtgggacttggg 16565102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 16600489 - 16600560
Alignment:
Q  297 tcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||| |||||| |||||| | ||||||||||| ||||||||||| ||||| ||| |||||| |||||||    
T  16600489 tcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgtgggacttggg 16600560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 29646139 - 29646076
Alignment:
Q  297 tcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtgg 359  Q
    ||||||| |||||| |||||| ||| ||||||||| ||||||||||| ||||| ||||||||||    
T  29646139 tcataaggtgaggattgcctcctctatataaactcctatcaagagtcttatctatccaatgtgg 29646076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 10903514 - 10903576
Alignment:
Q  298 cataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtgg 359  Q
    ||||||||||||| |||||| ||| ||||||||| ||||||||||| ||||| ||| ||||||    
T  10903514 cataagttgaggattgcctcctctatataaactcttatcaagagtcttatctatccgatgtgg 10903576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 47856017 - 47856083
Alignment:
Q  294 ggctcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtgg 359  Q
    |||||||||| || ||| |||||| ||||||||||||| ||||||||||| ||||| ||| ||||||    
T  47856017 ggctcataaggtggggagtgcctcctctttataaactcttatcaagagtcttatctatccgatgtgg 47856083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 48114051 - 48114001
Alignment:
Q  317 ctctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    |||||||||||||| ||||||||||| ||||| ||| |||||| |||||||    
T  48114051 ctctttataaactcttatcaagagtcttatctatccgatgtgggacttggg 48114001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 30296700 - 30296659
Alignment:
Q  300 taagttgaggaatgcctctctttataaactcatatcaagagt 341  Q
    |||| |||||| ||||||||||||||||||| ||||||||||    
T  30296700 taaggtgaggagtgcctctctttataaactcctatcaagagt 30296659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 37272077 - 37272126
Alignment:
Q  300 taagttgaggaatgcctc-tctttataaactcatatcaagagtcctatct 348  Q
    |||| |||||| |||||| ||||||||||||| |||||||||||||||||    
T  37272077 taaggtgaggagtgcctcctctttataaactcttatcaagagtcctatct 37272126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 43288336 - 43288287
Alignment:
Q  300 taagttgaggaatgcctc-tctttataaactcatatcaagagtcctatct 348  Q
    |||| |||||| |||||| ||||||||||||| |||||||||||||||||    
T  43288336 taagatgaggagtgcctcctctttataaactcttatcaagagtcctatct 43288287  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 34248431 - 34248371
Alignment:
Q  300 taagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtgg 359  Q
    |||| |||||| |||||| ||||||||||||| |||||||||||||||||  |||||||||    
T  34248431 taaggtgaggagtgcctcctctttataaactcttatcaagagtcctatctaaccaatgtgg 34248371  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 1067681 - 1067727
Alignment:
Q  321 ttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    |||||||||| |||| ||||||||||||||||||||| | |||||||    
T  1067681 ttataaactcttatctagagtcctatctttccaatgttggacttggg 1067727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 34248149 - 34248100
Alignment:
Q  300 taagttgaggaatgcctc-tctttataaactcatatcaagagtcctatct 348  Q
    |||| |||||| |||||| ||||||||||||| |||||||||||||||||    
T  34248149 taaggtgaggagtgcctcctctttataaactcttatcaagagtcctatct 34248100  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 395418 - 395371
Alignment:
Q  320 tttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||||||| |||||||| |||||||| |||||||||| |||||||    
T  395418 tttataaactcttatcaagaatcctatctatccaatgtgggacttggg 395371  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 29008147 - 29008084
Alignment:
Q  297 tcataagttgaggaatgcct-ctctttataaactcatatcaagagtcctatctttccaatgtgg 359  Q
    |||||||||||||| ||||| |||| ||||||||| ||||||||||| ||||| ||| ||||||    
T  29008147 tcataagttgaggattgccttctctatataaactcctatcaagagtcttatctatccgatgtgg 29008084  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 39268093 - 39268022
Alignment:
Q  297 tcataagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgtggtacttggg 367  Q
    ||||||| |||||| |||||| | ||||||||||| ||||||||||| ||||| ||| |||||| |||||||    
T  39268093 tcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttatctatccgatgtgggacttggg 39268022  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 29432466 - 29432424
Alignment:
Q  317 ctctttataaactcatatcaagagtcctatctttccaatgtgg 359  Q
    |||||||||||||| |||||||||||||||||  |||||||||    
T  29432466 ctctttataaactcttatcaagagtcctatctaaccaatgtgg 29432424  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 31905 - 31963
Alignment:
Q  300 taagttgaggaatgcctc-tctttataaactcatatcaagagtcctatctttccaatgt 357  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||| ||||| ||| ||||    
T  31905 taagttgaggagtgcctcgtctttataaactcttatcaagagtcttatctatccgatgt 31963  T

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