View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17264_low_30 (Length: 357)
Name: NF17264_low_30
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 52248468 - 52248152
Alignment:
| Q |
1 |
gaaatgtgaacgttgttctaaaaaatacgctgcgaaatgtgatttgaaagttcatatgaagagctgtggaactagagagtataaatgtgattgtggcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52248468 |
gaaatgtgaacgttgttctaaaaaatacgctgcgaaatgtgatttgaaagttcatatgaagagctgtggaactagagagtataaatgtgattgtggcaca |
52248369 |
T |
|
| Q |
101 |
gtgttttctaggttaatttcttttcc----atctttaattatctctcaaaatattgatcattttctgttttgttaatgttatctatttgtttataggaag |
196 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
52248368 |
gtgttttctaggttaatttcttttccatcgatctttaattatctctcaaaatattgattattttctgttttgttaatgttatttatttgtttataggaag |
52248269 |
T |
|
| Q |
197 |
gataattttgttacgcacagaaggttctgcgatggaatggtgaatgagagnnnnnnnnnnnnnnnnnnngctgttgttgtggtttctacttcttcttctt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
52248268 |
gataattttgttacgcacagaaggttctgcgatggaatggtgaatgagagtaataataataataataatgttgttgttgtggtttctacttcttcttctt |
52248169 |
T |
|
| Q |
297 |
caccggctacgccacca |
313 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
52248168 |
caccggctacgccacca |
52248152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 22085580 - 22085520
Alignment:
| Q |
40 |
tgatttgaaagttcatatgaagagctgtggaactagagagtataaatgtgattgtggcaca |
100 |
Q |
| |
|
||||| ||||| ||||| |||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22085580 |
tgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcaca |
22085520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University