View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17264_low_31 (Length: 355)
Name: NF17264_low_31
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 35805602 - 35805276
Alignment:
| Q |
20 |
aattcttcttcaagttctccgactctagtactcattctatccatatctaccttcaaaccctgattttcacgcacaaccgcaacccatccatctctttgta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35805602 |
aattcttcttcaagttctccgactctagtactcattctatccatatctaccttcaaaccctgattttcacgcacaaccgcaacccatccatctctttgta |
35805503 |
T |
|
| Q |
120 |
caatttctccagccgtaccacgtcgagcagtcggtcgagcaggaactgctggagcgctttcaccatccaaagcattgacacatccggctaatgctgttct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35805502 |
caatttctccagccgtaccacgtcgagcagtcgattgagcaggaactgctggagcgctttcaccatccaaagcattgacacatccggctaatgctgttct |
35805403 |
T |
|
| Q |
220 |
caaatgcagctgttcaaagaataggacttgaagaacaactctgaggggtaacctatcattttgagatgcatgagcacatgcatggattgagagtttttgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35805402 |
caaatgcagctgttcaaagaataggacttgaagaacaactctgaggggtaacctatcattttgagatgcatgagcacatgcatggattgagagtttttgg |
35805303 |
T |
|
| Q |
320 |
taatcaatgatgttgcatatttcttct |
346 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35805302 |
taatcaatgatgttgcatatttcttct |
35805276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University