View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_32 (Length: 334)
Name: NF17264_low_32
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 13786170 - 13786273
Alignment:
| Q |
214 |
aggcttaatacgttataattattgaaacacttaatattttataatgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagctga |
313 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13786170 |
aggcttaatactttataattattgaaacacttaatattttataatgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagctga |
13786269 |
T |
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| Q |
314 |
atct |
317 |
Q |
| |
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|||| |
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| T |
13786270 |
atct |
13786273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 214 - 317
Target Start/End: Complemental strand, 49282587 - 49282484
Alignment:
| Q |
214 |
aggcttaatacgttataattattgaaacacttaatattttataatgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagctga |
313 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||| |
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| T |
49282587 |
aggcttaatactttataattattgaaacacttaatattttataatgcaaaaaacttagctagatgcatatcagaattactttactaatcttttcagctga |
49282488 |
T |
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| Q |
314 |
atct |
317 |
Q |
| |
|
|||| |
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|
| T |
49282487 |
atct |
49282484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 13785973 - 13786054
Alignment:
| Q |
6 |
atgtcgaagaatataaatgacaaaagattacatgtcaaagtctgctagcataacactcattccaatttcaaacttctgctaaata |
90 |
Q |
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||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13785973 |
atgtcaaagattataaatgacaaaagatt---tgtcaaagtctgctagcataacactcattccaatttcaaacttctgctcaata |
13786054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 13306616 - 13306719
Alignment:
| Q |
214 |
aggcttaatacgttataattattgaaacacttaatattttataatgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagctga |
313 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13306616 |
aggcttaatactttataattattgaaacacttaatattttataatgcaaaaaatttagctaaatgcatatctaaattactttacttattttttcagctga |
13306715 |
T |
|
| Q |
314 |
atct |
317 |
Q |
| |
|
|||| |
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|
| T |
13306716 |
atct |
13306719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 13306409 - 13306493
Alignment:
| Q |
6 |
atgtcgaagaatataaatgacaaaagattacatgtcaaagtctgctagcataacactcattccaatttcaaacttctgctaaata |
90 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13306409 |
atgtcaaagattataaatgacaaaagattacatgtcaaagtctgctagcataacactcatttcaatttcaaacttctgctaaata |
13306493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 14597628 - 14597544
Alignment:
| Q |
6 |
atgtcgaagaatataaatgacaaaagattacatgtcaaagtctgctagcataacactcattccaatttcaaacttctgctaaata |
90 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14597628 |
atgtcaaagattataaatgacaaaagattacatgtcaaagtctgctagcataacgctcattccaatttcaaacttctgctaaata |
14597544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 14597421 - 14597379
Alignment:
| Q |
214 |
aggcttaatacgttataattattgaaacacttaatattttata |
256 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14597421 |
aggcttaatactttataattattgaaacacttaatattttata |
14597379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 13935260 - 13935361
Alignment:
| Q |
216 |
gcttaatacgttataattattgaaacacttaatattttataatgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagctgaat |
315 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
13935260 |
gcttaatactttataattattgaaacacttaatatttcataatgcaaaaaacttagctaaatgcatatctgaattactttactaatcttttcagctgaat |
13935359 |
T |
|
| Q |
316 |
ct |
317 |
Q |
| |
|
|| |
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|
| T |
13935360 |
ct |
13935361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 10397515 - 10397425
Alignment:
| Q |
228 |
ataattattgaaacacttaa-tattttataatgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagctgaatct |
317 |
Q |
| |
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||||||||||||| | |||| || |||||||||| ||| ||| |||||||| ||||||| |||||||||||| || |||| || ||||||| |
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| T |
10397515 |
ataattattgaaatatttaaatactttataatgcgaaatactcagctaaatacatatctaaattactttactaatctttttagttgaatct |
10397425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 16336471 - 16336423
Alignment:
| Q |
228 |
ataattattgaaacacttaatat-tttataatgcaaaaaacttagctaa |
275 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||| |||||||| |
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| T |
16336471 |
ataattattgaaacacttaaaaactttataatgcaaaaaatttagctaa |
16336423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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