View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_33 (Length: 334)
Name: NF17264_low_33
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 3047679 - 3047988
Alignment:
| Q |
8 |
tccaagaaaataacttgttgcaccatttctaagctattgatcttcacatgctgtcaacatgatttaaattagtataccatttggataactgaagaaaaac |
107 |
Q |
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| T |
3047679 |
tccaagagaataacttgttgcaccatttctaagctattgatcttcacatgctgtcaacatgatttaaattagtataccatttggataactgaagaaaaac |
3047778 |
T |
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| Q |
108 |
ttgaccacactcaatgtgattgaagaaagtgaatcgcgggcacgataataacatttgcatcctaagtactaaaatttccaattggatttacatgtacaat |
207 |
Q |
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| T |
3047779 |
ttgaccacactcaatgtgattgaagaaagtgaatcgcgggcacgataataacatttgcatcctaagtactaaaatttccaattggatttacatgtacaat |
3047878 |
T |
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| Q |
208 |
atgatgtaaaagtttcagttttcattttgaaattgacaatgaaatctttaaagaatatttttctcttgatgaaattcgacttagggaaagtgttgtgcat |
307 |
Q |
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| T |
3047879 |
atgatgtaaaagtttcagttttcattttgaaattgacaatgtaatctttaaagaatatttttctcttgatgaaattcgacttagggaaagtgttgtgcat |
3047978 |
T |
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| Q |
308 |
tgcgactagt |
317 |
Q |
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| T |
3047979 |
tgcgactagt |
3047988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 3067095 - 3067302
Alignment:
| Q |
28 |
caccatttctaagctattgatcttcacatgctgtcaacatgatttaaattagtataccattt-ggataactgaagaaaaacttgaccacactcaatgtga |
126 |
Q |
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| T |
3067095 |
caccatctctaagctattgatctccaaatgttgtcaacatgatttaaattag--taccatttggggtaagcgaagcacaacttga--tcactcaatgtgc |
3067190 |
T |
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| Q |
127 |
ttgaagaaagtgaatcgcgggcacgataataacatttgcatcc-taagtactaaaatttccaattggatttacatgtacaatatgatgtaaaagtttcag |
225 |
Q |
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| T |
3067191 |
ttgaagaaagtgaagcaaatatacaatgataaaatttg-atccatatgcactaaaattagcatttggatttacttgcacagtatgatgtaaaagattcaa |
3067289 |
T |
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| Q |
226 |
ttttcattttgaa |
238 |
Q |
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| T |
3067290 |
ttttcattttgaa |
3067302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 3069338 - 3069515
Alignment:
| Q |
61 |
tcaacatgatttaaattagtataccatttgga-taactgaagaaaaacttgaccacactcaatgtgattgaagaaagtgaatcgcgggcacgataataac |
159 |
Q |
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| T |
3069338 |
tcaacatgatttaaattagta--ccatttggggtaagtgaagcacaacttgatcac--tcaatgtaattgaagaaagtgaagcagatgcacaataataaa |
3069433 |
T |
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| Q |
160 |
atttgcatcctaagtactaaaatttccaattggatttacatgtacaatatgatgtaaaagtttcagttttcattttgaaattg |
242 |
Q |
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| T |
3069434 |
atttgattcatatggactaaaattagcatttggatttacttgcacag-atgatgtaaaagattcaattttcattttgaaattg |
3069515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 3065637 - 3065721
Alignment:
| Q |
31 |
catttctaagctattgatcttcacatgctgtcaacatgatttaaattagtataccatttggataactgaagaaaaacttgaccac |
115 |
Q |
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| T |
3065637 |
catttccaagctattgatctacaaatgcagtcaaaatattttaaattagtatatcatctggccaagtgaagcagaacttgaccac |
3065721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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