View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_34 (Length: 333)
Name: NF17264_low_34
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 11591468 - 11591634
Alignment:
| Q |
1 |
ctacacatgaaagagttcagaagctgttgaaaccaccaacttttgcttcaaaagtgttccaacaaaaagggaagtgttgtagattggtgttcagaagctc |
100 |
Q |
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| T |
11591468 |
ctacacatgaaagagttcagaagctgttgaaaccaccaacttttgcttcaaaagtgttccaacaaaaagggaagtgttgtagattggtgttcagaagctc |
11591567 |
T |
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| Q |
101 |
ttgtatcagtgcaaggaaatcagcttctgttgaagttgttcctgtgtcacctgaagatgattcaaag |
167 |
Q |
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| T |
11591568 |
ttgtatcagtgcaaggaaatcagctcctgttgaagttgttcctgtgtcacctgaagatgattcaaag |
11591634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 11591691 - 11591793
Alignment:
| Q |
224 |
tggcccagatggttgaactgatggataatggaaatgggttttgggttttgattatactttagtaagttcctgaaatgtatagaagttatatgtagtataa |
323 |
Q |
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| T |
11591691 |
tggcccagatggttgaaatgatggataatggaaatgggttttgggttttgattatactttagtaagttcctgaaaagtatagaagttatatgtagtataa |
11591790 |
T |
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| Q |
324 |
tct |
326 |
Q |
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| T |
11591791 |
tct |
11591793 |
T |
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