View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17264_low_35 (Length: 332)

Name: NF17264_low_35
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17264_low_35
NF17264_low_35
[»] chr8 (29 HSPs)
chr8 (17-221)||(15835554-15835757)
chr8 (228-296)||(4154764-4154832)
chr8 (232-326)||(15836494-15836582)
chr8 (228-295)||(4154378-4154445)
chr8 (228-295)||(41972151-41972218)
chr8 (231-295)||(20995502-20995566)
chr8 (228-295)||(9608738-9608805)
chr8 (228-295)||(3038388-3038455)
chr8 (228-295)||(8918862-8918929)
chr8 (228-295)||(9620386-9620453)
chr8 (229-300)||(40518570-40518641)
chr8 (229-295)||(6876961-6877028)
chr8 (256-295)||(9309348-9309387)
chr8 (228-295)||(9620774-9620841)
chr8 (228-290)||(45122008-45122070)
chr8 (254-295)||(18645711-18645752)
chr8 (228-293)||(45122155-45122220)
chr8 (256-292)||(45123002-45123038)
chr8 (256-295)||(147822-147861)
chr8 (228-295)||(33831971-33832038)
chr8 (229-295)||(147444-147510)
chr8 (228-266)||(34219231-34219269)
chr8 (228-293)||(1514013-1514078)
chr8 (256-300)||(6731891-6731936)
chr8 (228-300)||(18372354-18372427)
chr8 (256-300)||(18372497-18372542)
chr8 (228-288)||(3669687-3669747)
chr8 (256-288)||(3670060-3670092)
chr8 (267-295)||(9507770-9507798)
[»] chr5 (29 HSPs)
chr5 (149-221)||(20140065-20140137)
chr5 (228-295)||(31509616-31509683)
chr5 (228-296)||(1028615-1028683)
chr5 (235-298)||(36522001-36522064)
chr5 (228-295)||(36568665-36568732)
chr5 (228-297)||(41632773-41632842)
chr5 (236-300)||(26074252-26074316)
chr5 (228-295)||(12662750-12662817)
chr5 (228-293)||(35150002-35150067)
chr5 (228-300)||(36522335-36522407)
chr5 (228-295)||(299482-299549)
chr5 (256-295)||(13415886-13415925)
chr5 (228-295)||(36492315-36492382)
chr5 (250-300)||(24489324-24489374)
chr5 (246-295)||(36527199-36527248)
chr5 (256-300)||(13785735-13785779)
chr5 (256-292)||(40296441-40296477)
chr5 (228-295)||(6224189-6224256)
chr5 (260-295)||(15370092-15370127)
chr5 (236-295)||(26074888-26074947)
chr5 (260-295)||(35150740-35150775)
chr5 (260-295)||(35151031-35151066)
chr5 (228-266)||(31509753-31509791)
chr5 (249-295)||(42508605-42508651)
chr5 (228-285)||(3622978-3623035)
chr5 (232-288)||(623818-623874)
chr5 (228-292)||(3295113-3295176)
chr5 (256-288)||(5723917-5723949)
chr5 (236-288)||(32487394-32487446)
[»] chr4 (31 HSPs)
chr4 (228-296)||(28034221-28034289)
chr4 (228-295)||(2740693-2740760)
chr4 (228-298)||(3244547-3244617)
chr4 (228-294)||(44620654-44620720)
chr4 (228-300)||(36629225-36629297)
chr4 (228-295)||(52884688-52884755)
chr4 (228-295)||(52884880-52884947)
chr4 (228-295)||(54741274-54741341)
chr4 (228-300)||(2741059-2741131)
chr4 (228-295)||(16888912-16888980)
chr4 (228-295)||(3341121-3341188)
chr4 (228-295)||(10245913-10245980)
chr4 (228-295)||(11348424-11348491)
chr4 (228-295)||(12197371-12197438)
chr4 (256-295)||(22183388-22183427)
chr4 (228-295)||(39792956-39793023)
chr4 (229-290)||(23556963-23557024)
chr4 (256-295)||(3700358-3700397)
chr4 (228-295)||(4390197-4390264)
chr4 (228-295)||(4955413-4955480)
chr4 (228-295)||(6876194-6876260)
chr4 (256-295)||(22028085-22028124)
chr4 (256-295)||(25483329-25483368)
chr4 (256-295)||(34646773-34646812)
chr4 (256-295)||(36608785-36608824)
chr4 (236-295)||(41707568-41707627)
chr4 (228-295)||(49076544-49076611)
chr4 (228-295)||(50002419-50002486)
chr4 (229-295)||(34544097-34544165)
chr4 (228-300)||(54108903-54108973)
chr4 (228-295)||(16889632-16889700)
[»] chr6 (25 HSPs)
chr6 (228-295)||(6071125-6071192)
chr6 (229-300)||(33605963-33606034)
chr6 (229-295)||(33605647-33605713)
chr6 (228-297)||(12092580-12092649)
chr6 (228-300)||(10074089-10074161)
chr6 (228-300)||(10074461-10074533)
chr6 (229-295)||(8481920-8481985)
chr6 (228-295)||(2579970-2580037)
chr6 (229-295)||(12085133-12085198)
chr6 (228-300)||(2378113-2378186)
chr6 (228-296)||(10073714-10073780)
chr6 (229-290)||(12071790-12071851)
chr6 (228-300)||(29518907-29518980)
chr6 (228-288)||(26544049-26544109)
chr6 (228-288)||(29518503-29518563)
chr6 (228-288)||(32741179-32741239)
chr6 (228-295)||(2578541-2578607)
chr6 (229-288)||(14748437-14748496)
chr6 (261-295)||(7588355-7588389)
chr6 (228-289)||(593807-593868)
chr6 (256-300)||(2578960-2579004)
chr6 (228-288)||(3058226-3058286)
chr6 (228-288)||(3409259-3409319)
chr6 (238-290)||(31714669-31714720)
chr6 (228-288)||(35210204-35210264)
[»] chr3 (37 HSPs)
chr3 (228-293)||(39336327-39336392)
chr3 (228-295)||(12114660-12114727)
chr3 (228-299)||(21832441-21832512)
chr3 (228-298)||(47964616-47964686)
chr3 (248-295)||(12747870-12747917)
chr3 (228-295)||(46546423-46546490)
chr3 (255-299)||(9240138-9240182)
chr3 (229-292)||(7767413-7767476)
chr3 (256-295)||(8327897-8327936)
chr3 (256-295)||(25739551-25739590)
chr3 (228-295)||(31190010-31190077)
chr3 (228-295)||(33175762-33175829)
chr3 (228-295)||(35946515-35946582)
chr3 (228-295)||(47965013-47965080)
chr3 (228-295)||(54017914-54017981)
chr3 (229-295)||(39914245-39914311)
chr3 (255-292)||(1634440-1634477)
chr3 (238-295)||(2299969-2300026)
chr3 (228-293)||(29644679-29644744)
chr3 (255-295)||(32463026-32463066)
chr3 (231-295)||(33809109-33809173)
chr3 (231-295)||(54451277-54451341)
chr3 (260-295)||(15773185-15773220)
chr3 (256-295)||(29645028-29645067)
chr3 (236-295)||(33803358-33803417)
chr3 (228-283)||(36986046-36986101)
chr3 (228-283)||(37011485-37011540)
chr3 (256-295)||(42342514-42342553)
chr3 (236-295)||(43346643-43346702)
chr3 (228-295)||(43346889-43346956)
chr3 (256-295)||(45901706-45901745)
chr3 (228-295)||(49336785-49336852)
chr3 (256-295)||(52634669-52634708)
chr3 (256-295)||(53577357-53577396)
chr3 (236-300)||(22304233-22304298)
chr3 (256-292)||(11661531-11661567)
chr3 (256-288)||(50612578-50612610)
[»] chr2 (39 HSPs)
chr2 (228-300)||(28531412-28531484)
chr2 (228-300)||(33561549-33561621)
chr2 (228-300)||(33953869-33953941)
chr2 (228-295)||(962591-962658)
chr2 (229-292)||(29874122-29874185)
chr2 (234-295)||(30313171-30313232)
chr2 (228-300)||(40679727-40679799)
chr2 (228-295)||(29873635-29873702)
chr2 (232-295)||(30323457-30323520)
chr2 (228-300)||(41678465-41678539)
chr2 (237-295)||(33954368-33954426)
chr2 (228-300)||(7598596-7598669)
chr2 (231-295)||(36785664-36785728)
chr2 (228-296)||(42514641-42514709)
chr2 (228-295)||(28254335-28254402)
chr2 (256-295)||(31468872-31468911)
chr2 (256-295)||(38796344-38796383)
chr2 (229-295)||(16542442-16542508)
chr2 (256-293)||(35580849-35580886)
chr2 (228-300)||(37106175-37106248)
chr2 (228-288)||(36178703-36178763)
chr2 (256-295)||(3673078-3673117)
chr2 (228-295)||(6421378-6421445)
chr2 (228-295)||(15880256-15880323)
chr2 (256-295)||(29676896-29676935)
chr2 (228-295)||(36005978-36006044)
chr2 (256-295)||(37632723-37632762)
chr2 (256-295)||(38796746-38796785)
chr2 (228-300)||(42515000-42515076)
chr2 (261-295)||(16590881-16590915)
chr2 (228-293)||(3594276-3594341)
chr2 (228-277)||(40163471-40163520)
chr2 (228-293)||(40733512-40733577)
chr2 (228-288)||(5543096-5543156)
chr2 (228-288)||(14745765-14745825)
chr2 (228-288)||(37105924-37105984)
chr2 (255-295)||(37895186-37895226)
chr2 (228-288)||(41283573-41283633)
chr2 (255-295)||(43443107-43443147)
[»] chr1 (38 HSPs)
chr1 (233-297)||(19283558-19283622)
chr1 (228-300)||(22077593-22077665)
chr1 (229-300)||(50469180-50469251)
chr1 (234-288)||(47379889-47379943)
chr1 (228-295)||(1188686-1188753)
chr1 (228-295)||(22793271-22793338)
chr1 (229-295)||(39066299-39066365)
chr1 (255-300)||(22077247-22077292)
chr1 (228-292)||(45084378-45084442)
chr1 (228-295)||(66570-66637)
chr1 (228-295)||(17294570-17294637)
chr1 (228-295)||(24600412-24600479)
chr1 (228-295)||(37850698-37850765)
chr1 (228-295)||(41184523-41184590)
chr1 (228-295)||(5320063-5320130)
chr1 (228-295)||(34364500-34364567)
chr1 (228-295)||(41142365-41142432)
chr1 (249-296)||(44685448-44685495)
chr1 (229-295)||(24132084-24132150)
chr1 (228-293)||(1187462-1187527)
chr1 (228-300)||(3537245-3537318)
chr1 (228-288)||(44290923-44290983)
chr1 (228-295)||(4878796-4878863)
chr1 (228-295)||(26661620-26661687)
chr1 (228-295)||(31767259-31767326)
chr1 (256-295)||(34364918-34364957)
chr1 (228-295)||(34649431-34649498)
chr1 (256-295)||(35154165-35154204)
chr1 (256-295)||(37556104-37556143)
chr1 (228-295)||(40082400-40082467)
chr1 (256-295)||(41157368-41157407)
chr1 (228-295)||(50556444-50556511)
chr1 (256-300)||(44290584-44290629)
chr1 (255-295)||(21378166-21378206)
chr1 (228-300)||(24448265-24448337)
chr1 (256-300)||(30630764-30630808)
chr1 (255-295)||(45839620-45839660)
chr1 (256-288)||(50051777-50051809)
[»] scaffold0113 (2 HSPs)
scaffold0113 (228-295)||(39831-39898)
scaffold0113 (228-293)||(39452-39516)
[»] chr7 (29 HSPs)
chr7 (228-295)||(1085714-1085781)
chr7 (228-295)||(7517573-7517640)
chr7 (228-295)||(7554018-7554085)
chr7 (228-291)||(10341829-10341892)
chr7 (230-295)||(8128541-8128606)
chr7 (228-296)||(28301641-28301709)
chr7 (236-295)||(118407-118466)
chr7 (228-295)||(30245487-30245554)
chr7 (228-295)||(30255332-30255399)
chr7 (228-295)||(36109015-36109082)
chr7 (228-295)||(43241488-43241555)
chr7 (228-295)||(45434629-45434696)
chr7 (229-295)||(30244694-30244760)
chr7 (242-296)||(37345553-37345607)
chr7 (256-293)||(36622955-36622992)
chr7 (228-295)||(23475-23542)
chr7 (228-295)||(16569189-16569256)
chr7 (228-295)||(16596406-16596473)
chr7 (228-295)||(22566760-22566827)
chr7 (256-295)||(24177428-24177467)
chr7 (256-295)||(30244263-30244302)
chr7 (228-295)||(30245070-30245137)
chr7 (228-295)||(36534882-36534949)
chr7 (228-300)||(37345904-37345978)
chr7 (256-299)||(40094520-40094563)
chr7 (256-295)||(41910720-41910759)
chr7 (228-300)||(37533108-37533181)
chr7 (228-292)||(15902296-15902360)
chr7 (228-288)||(29157565-29157625)
[»] scaffold0078 (1 HSPs)
scaffold0078 (228-295)||(5350-5417)
[»] scaffold0734 (2 HSPs)
scaffold0734 (228-295)||(5389-5456)
scaffold0734 (228-295)||(5770-5837)
[»] scaffold0702 (1 HSPs)
scaffold0702 (228-300)||(240-313)
[»] scaffold0391 (2 HSPs)
scaffold0391 (228-295)||(1204-1271)
scaffold0391 (256-295)||(3111-3150)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 9e-98; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 15835554 - 15835757
Alignment:
Q  17 caatttcatcaagagataatcatcagaaaaaacgagagagcgagctagaaattaagaacggggtgtatttaatgagagcaatacttaataaatactaata 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15835554 caatttcatcaagagataatcatcagaaaaaacgatagagcgagctagaaattaagaacggggtgtatttaatgagagcaatacttaataaatactaata 15835653  T
Q  117 ttctggcaacaattgtaaacaagaacactactttaaacttatgttagcaacattttaaaatatgttgcccatcaaattttaccaaaaggtccaagtgtat 216  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15835654 ttcttgcaacaa-tgtaaacaagaacactactttaaacttaggttagcaacattttaaaatatgttgcccatcaaattttaccaaaaggtctaagtgtat 15835752  T
Q  217 tagtg 221  Q
    |||||    
T  15835753 tagtg 15835757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 4154764 - 4154832
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacac 296  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  4154764 cttataaagtgttcaacctccacttttctatcagatgtgggacatataactcacacttgcacacaacac 4154832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 15836494 - 15836582
Alignment:
Q  232 taaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactcccaaataaaaaatcaacattcttctcac 326  Q
    |||||||||||||||||||||||||||| |||||| | |||      ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15836494 taaagtgttcaacctccactttactatcggatgtgagtgat------cacacttgcacacaacacttccaaataaaaaatcaacattcttctcac 15836582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 4154378 - 4154445
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||| ||||||||||||    
T  4154378 cttataaagtgttcaacctccacttttctatctgatgtaggacatataactcacatttgcacacaaca 4154445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 41972218 - 41972151
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  41972218 cttataaggtgttcaacctttacttttctatccgatgtgggacatataactcacacttgcacacaaca 41972151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 20995502 - 20995566
Alignment:
Q  231 ataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||||||  |||| |||||| || |||||||||||||||||||||||||    
T  20995502 ataaagtgttcaacctccacttttttatctgatgtgagacatataactcacacttgcacacaaca 20995566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 9608805 - 9608738
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  9608805 cttataaggtgttcaacctttacttttctatccgatatgggacatataactcacacttgcacacaaca 9608738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 3038388 - 3038455
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||  ||| |  |||||||||||||| |||||||||||||||| ||||||||    
T  3038388 cttataaagtgttcaacctttactattttatccgatgtgggacatataactcacacttgtacacaaca 3038455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 8918862 - 8918929
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||  ||| | ||||| ||||||||| || ||||||||||||||||||||||    
T  8918862 cttataaagtgttcaacctttactctgctatctgatgtgggacatgtaactcacacttgcacacaaca 8918929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 9620386 - 9620453
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||| ||||||||| |||| | | |||||| |||||||| ||||||||||||||||    
T  9620386 cttataaagtgttcaaactccacttttctattcaacgtgggatatataactgacacttgcacacaaca 9620453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 40518641 - 40518570
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    |||||| |||||||||||  ||||| ||||| ||||||||| |||||||||||||||| |||||| ||||||    
T  40518641 ttataaggtgttcaacctttacttttctatctgatgtgggacatataactcacacttgaacacaatactccc 40518570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 6876961 - 6877028
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggag-atataactcacacttgcacacaaca 295  Q
    |||||| |||||||||||  |||||  ||||||||||||||  |||||||||||||||||||||||||    
T  6876961 ttataaggtgttcaacctttacttttttatccgatgtgggactatataactcacacttgcacacaaca 6877028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 9309387 - 9309348
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  9309387 tatccgatgtgggacatataactcacacttgcacacaaca 9309348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 9620774 - 9620841
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||| ||||| || ||||| ||||| | |||| || |||||||||||||||||||||||||    
T  9620774 cttataaagtgatcaacttctacttttctatctgttgtgagacatataactcacacttgcacacaaca 9620841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 45122008 - 45122070
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca 290  Q
    |||||||||||||||||||  ||| |  ||| |||||||||| ||||||||||||||||||||    
T  45122008 cttataaagtgttcaacctttactattttatgcgatgtgggacatataactcacacttgcaca 45122070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 18645711 - 18645752
Alignment:
Q  254 actatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  18645711 actatccgatgtgagacatataactcacacttgcacacaaca 18645752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 45122155 - 45122220
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    ||||||| |||||||||||  ||| |  ||||||||||| || |||||||||||||||||||||||    
T  45122155 cttataaggtgttcaacctttactattttatccgatgtgagacatataactcacacttgcacacaa 45122220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 45123038 - 45123002
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacaca 292  Q
    |||||||||||||| ||||||||||||||||||||||    
T  45123038 tatccgatgtgggacatataactcacacttgcacaca 45123002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 147861 - 147822
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  147861 tatcagatgtgggacatataactcacacttgcacacaaca 147822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 33832038 - 33831971
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||||||| || ||||| || | | | ||| || |||||||||||||||||||||||||    
T  33832038 cttataaagtgttcaacttctacttttctcttcaacgtgagacatataactcacacttgcacacaaca 33831971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 147510 - 147444
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||| ||| |||||    
T  147510 ttataaggtgttcaacctttactcttttatccgatgtgggacatataactcacacttacacgcaaca 147444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 34219231 - 34219269
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtg 266  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  34219231 cttataaagtgttcaacctccacttttctaaccgatgtg 34219269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 1514013 - 1514078
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||| ||||| ||||||    
T  1514013 cttataaggtgttcaacctttactcttttatccgatgtgggatatataactcatacttgtacacaa 1514078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 6731936 - 6731891
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgc-acacaacactccc 300  Q
    |||||||||||||| ||||||||||||||||| | |||||||||||    
T  6731936 tatccgatgtgggacatataactcacacttgcaaaacaacactccc 6731891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 18372354 - 18372427
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcac-acaacactccc 300  Q
    ||||||| |||||||||||  ||| |  ||||||||||| || ||||||||||||||| ||| |||||||||||    
T  18372354 cttataaggtgttcaacctttactattttatccgatgtgagacatataactcacactttcacaacaacactccc 18372427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 18372497 - 18372542
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcac-acaacactccc 300  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||    
T  18372497 tatccgatgtgggacatataactcacactttcacaacaacactccc 18372542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 3669747 - 3669687
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||| ||||||||| ||||||||||||||||||    
T  3669747 cttataaggtgttcaacctttactattttatctgatgtgggacatataactcacacttgca 3669687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 3670092 - 3670060
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgca 288  Q
    |||||||||||||| ||||||||||||||||||    
T  3670092 tatccgatgtgggacatataactcacacttgca 3670060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 9507798 - 9507770
Alignment:
Q  267 ggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||||||||||||    
T  9507798 ggagatataactcacacttgcacacaaca 9507770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 20140065 - 20140137
Alignment:
Q  149 ttaaacttatgttagcaacattttaaaatatgttgcccatcaaattttaccaaaaggtccaagtgtattagtg 221  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||    
T  20140065 ttaaacttatgttagtaacatttaaaaatatgttacccatcaaattttaccaaaaggtctaaatgtattagtg 20140137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 31509683 - 31509616
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  31509683 cttataaagtgctcaacctccacttttctatccgatgtgagacatataactcacacttgcacacaaca 31509616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 1028615 - 1028683
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacac 296  Q
    ||||||||||||||| |||  ||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  1028615 cttataaagtgttcatcctttacttttctatccgatgtgggacatataactcacacttgtacacaacac 1028683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 36522001 - 36522064
Alignment:
Q  235 agtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactc 298  Q
    ||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||| ||||||||||    
T  36522001 agtgttcaacctcaacttttctatctgatgtgggacatataactcacacttgcgcacaacactc 36522064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 36568665 - 36568732
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| ||||||||| |  ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  36568665 cttataaggtgttcaacttttacttttctatccgatgtgggacatataactcacacttgcacacaaca 36568732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 41632842 - 41632773
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacact 297  Q
    ||||||| |||||||||||  ||||| |||||||||||| || |||||||| ||||||||||||||||||    
T  41632842 cttataaggtgttcaacctttacttttctatccgatgtgagacatataacttacacttgcacacaacact 41632773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 26074252 - 26074316
Alignment:
Q  236 gtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    |||||||||||  |||||  ||||||||||| || ||||||||||||||||||||||||||||||    
T  26074252 gtgttcaacctttacttttttatccgatgtgtgacatataactcacacttgcacacaacactccc 26074316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 12662750 - 12662817
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||| ||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||||    
T  12662750 cttataaaatgttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaaca 12662817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 35150067 - 35150002
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||    
T  35150067 cttataaggtgttcaaccttgactcttttatccgatgtgggacatataactcacacttgcacacaa 35150002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 36522335 - 36522407
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    |||||||| |||||||| |||| ||| |||||| ||||| || ||||||||||||||| || |||||||||||    
T  36522335 cttataaaatgttcaacttccatttttctatccaatgtgagacatataactcacactttcatacaacactccc 36522407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 299549 - 299482
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||||| |||||||    
T  299549 cttataaggtgttcaacctttactgttttatccgatgtgggacatataactcacacttgcgcacaaca 299482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 13415886 - 13415925
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  13415886 tatccgatgtgggacatataactcacacttgcacacaaca 13415925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 36492315 - 36492382
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||| ||||||    
T  36492315 cttataaggtgttcaacctttactcttttatccgatgtgggacatataactcacacttgcaaacaaca 36492382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 24489324 - 24489374
Alignment:
Q  250 ctttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    |||| ||||| ||||||||| |||||||||||||||| |||||||||||||    
T  24489324 cttttctatctgatgtgggacatataactcacacttgaacacaacactccc 24489374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 36527199 - 36527248
Alignment:
Q  246 tccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||| ||||| ||||||||| |||||||||||||||| ||||||||    
T  36527199 tccacttttctatctgatgtgggacatataactcacacttgtacacaaca 36527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 13785735 - 13785779
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||    
T  13785735 tatccgatttgggacatataactcacacttccacacaacactccc 13785779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 40296441 - 40296477
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacaca 292  Q
    |||||||||||||| ||||||||||||||||||||||    
T  40296441 tatccgatgtgggacatataactcacacttgcacaca 40296477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 6224256 - 6224189
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  ||||||| |||||| |||||||||||||||| ||||||||    
T  6224256 cttataaggtgttcaacctttactcttttatccgaagtgggacatataactcacacttgtacacaaca 6224189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 295
Target Start/End: Complemental strand, 15370127 - 15370092
Alignment:
Q  260 cgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| |||||||||||||||||||||||||    
T  15370127 cgatgtgggacatataactcacacttgcacacaaca 15370092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 26074888 - 26074947
Alignment:
Q  236 gtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||  ||| |  |||||||||||||| |||||||||||||||| ||||||||    
T  26074888 gtgttcaacctttactcttttatccgatgtgggacatataactcacacttgtacacaaca 26074947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 295
Target Start/End: Complemental strand, 35150775 - 35150740
Alignment:
Q  260 cgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| |||||||||||||||||||||||||    
T  35150775 cgatgtgggacatataactcacacttgcacacaaca 35150740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 295
Target Start/End: Complemental strand, 35151066 - 35151031
Alignment:
Q  260 cgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| |||||||||||||||||||||||||    
T  35151066 cgatgtgggacatataactcacacttgcacacaaca 35151031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 31509791 - 31509753
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtg 266  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  31509791 cttataaagtgctcaacctccacttttctatccgatgtg 31509753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 42508651 - 42508605
Alignment:
Q  249 actttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||| ||||||||||||||| |||||| ||||||||| ||||||||    
T  42508651 acttttctatccgatgtgggatatataattcacacttgtacacaaca 42508605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 3622978 - 3623035
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacactt 285  Q
    |||||| |||||||||| |||||||| ||||||||| |  || |||||||||||||||    
T  3622978 cttatagagtgttcaacttccacttttctatccgatttaagacatataactcacactt 3623035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 623874 - 623818
Alignment:
Q  232 taaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    |||||||||||||||  ||| |  ||||||||||| || ||||||||||||||||||    
T  623874 taaagtgttcaacctttactattatatccgatgtgagacatataactcacacttgca 623818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 3295113 - 3295176
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacaca 292  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||| |||||||||||||||||    
T  3295113 cttataaggtgttcaacctttactattttatccgatgtgggacatat-actcacacttgcacaca 3295176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 5723917 - 5723949
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgca 288  Q
    |||||||||||||| ||||||||||||||||||    
T  5723917 tatccgatgtgggacatataactcacacttgca 5723949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 32487446 - 32487394
Alignment:
Q  236 gtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    |||||||||||  ||| |  |||||||||||||| ||||||||||||||||||    
T  32487446 gtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 32487394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 28034289 - 28034221
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacac 296  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||    
T  28034289 cttataaagtgttcaacctccacttttctatccgatgcgggacatataattcacacttgcacacaacac 28034221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 2740760 - 2740693
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| | ||||||||||||||| |||||||||||||||||||||||||    
T  2740760 cttataaggtgttcaacctttactgttctatccgatgtgggacatataactcacacttgcacacaaca 2740693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 3244547 - 3244617
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactc 298  Q
    |||||||  ||||||||||  ||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  3244547 cttataagatgttcaacctttacttttctatccgatgtgagacatataactcacacttgcacacaacactc 3244617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 44620720 - 44620654
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaac 294  Q
    |||||||||||||||||||| ||| |   ||||||||||||| ||||||||||||||||||||||||    
T  44620720 cttataaagtgttcaacctctactatttcatccgatgtgggacatataactcacacttgcacacaac 44620654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 36629297 - 36629225
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||| ||||| ||| |  ||||| ||||||||||||||| |||||||||||||||| |||||||||||||    
T  36629297 cttataaggtgtttaacttttacttttctatccgatgtgggacatataactcacacttgaacacaacactccc 36629225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 52884755 - 52884688
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||||    
T  52884755 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaaca 52884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 52884947 - 52884880
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||||    
T  52884947 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaaca 52884880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 54741274 - 54741341
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||||| |||||||||||| || |||||| ||||||||||||||||||    
T  54741274 cttataaggtgttcaacctttacttttctatccgatgtgagacatataattcacacttgcacacaaca 54741341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 2741131 - 2741059
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||| || ||||||||  ||| | ||||| ||||||||| |||||||||||||||||||| |||||||||    
T  2741131 cttataaggtattcaacctttactattctatctgatgtgggacatataactcacacttgcacataacactccc 2741059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 16888912 - 16888980
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttg-cacacaaca 295  Q
    ||||||| || ||||||||  ||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  16888912 cttataaggtattcaacctttacttttctatccgatgtgggacatataactcacacttgccacacaaca 16888980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 3341188 - 3341121
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||| |||||  ||| |  ||||| |||||||| |||||||||||||||||||||||||    
T  3341188 cttataaagtgtttaacctttactcttttatccaatgtgggacatataactcacacttgcacacaaca 3341121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 10245980 - 10245913
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||  |||||||||||||||||||||||||    
T  10245980 cttataaggtgttcaacctttactcttttatccgatgtggggcatataactcacacttgcacacaaca 10245913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 11348424 - 11348491
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||||||| |  |||| ||||| | | |||||||||||| ||||||||||||    
T  11348424 cttataaagtgttcaacctccactattttatctgatgtagaacatataactcacaattgcacacaaca 11348491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 12197438 - 12197371
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| || ||||| |||||| ||||  |||||||||  ||||||||||||||||||||||||    
T  12197438 cttataaagtattgaaccttcacttttctatttgatgtgggacctataactcacacttgcacacaaca 12197371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 22183388 - 22183427
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  22183388 tatccgatgtgggatatataactcacacttgcacacaaca 22183427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 39792956 - 39793023
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| ||||||||| |  ||||| ||||| ||||||||| |||||||||||||||| ||||||||    
T  39792956 cttataaggtgttcaacatttacttttctatctgatgtgggacatataactcacacttgtacacaaca 39793023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 23556963 - 23557024
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca 290  Q
    ||||||| ||||||||||||||||| |||||||||||   | || |||||||||||||||||    
T  23556963 ttataaaatgttcaacctccacttttctatccgatgtaaaacatttaactcacacttgcaca 23557024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 3700397 - 3700358
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  3700397 tatccgatgtaggacatataactcacacttgcacacaaca 3700358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 4390197 - 4390264
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||| ||||||||| || ||||||||||||||||||||||    
T  4390197 cttataaggtgttcaacctttactcttttatctgatgtgggatatgtaactcacacttgcacacaaca 4390264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 4955413 - 4955480
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||| || || |||||||||||||||||||||||||    
T  4955413 cttataaggtgttcaaccttaactattttatccgatatgagacatataactcacacttgcacacaaca 4955480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 6876194 - 6876260
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| ||||||| |||  ||||||||||  || |||||| ||||||||||||||||||    
T  6876194 cttataaagtgttcgacctccagtttt-tatccgatgtaagatatataaatcacacttgcacacaaca 6876260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 22028085 - 22028124
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  22028085 tatccgatgtgggacatataagtcacacttgcacacaaca 22028124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 25483368 - 25483329
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  25483368 tatccgatgtgagacatataactcacacttgcacacaaca 25483329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 34646773 - 34646812
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  34646773 tatccgatgtgggacatataactcacacttgtacacaaca 34646812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 36608785 - 36608824
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  36608785 tatccgatgttggacatataactcacacttgcacacaaca 36608824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 41707568 - 41707627
Alignment:
Q  236 gtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||  ||| |  |||||||||||||| |||||||||||||||| ||||||||    
T  41707568 gtgttcaacctttactcttttatccgatgtgggacatataactcacacttgtacacaaca 41707627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 49076544 - 49076611
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||| ||| | |||||||||||||||||||||||||    
T  49076544 cttataaggtgttcaacctttactgttttatccgatatggtacatataactcacacttgcacacaaca 49076611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 50002486 - 50002419
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| ||||||||||||||  ||| |  ||||||||||| || |||||||||||||||||| ||||||    
T  50002486 cttaaaaagtgttcaacctttactcttttatccgatgtgagacatataactcacacttgcaaacaaca 50002419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 34544165 - 34544097
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtggg--agatataactcacacttgcacacaaca 295  Q
    |||||||||| |||||||||||||| |||| ||||||| |  | ||||||||||||||| | |||||||    
T  34544165 ttataaagtgatcaacctccacttttctattcgatgtgagatatatataactcacacttactcacaaca 34544097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 54108973 - 54108903
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||  ||| |||||||||||||||||||||    
T  54108973 cttataaggtgttcaacctttactattttatccgatgtgggacata--actgacacttgcacacaacactccc 54108903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 16889632 - 16889700
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttg-cacacaaca 295  Q
    ||||||| || ||||||||  ||||| ||||||||| || || |||||||||||||||| |||||||||    
T  16889632 cttataaggtattcaacctttacttttctatccgatttgagacatataactcacacttgccacacaaca 16889700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 6071192 - 6071125
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||    
T  6071192 cttataaagtgttcaacctccacttttctattcaatgtgggacatataactcacacttgcacacaaca 6071125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 33606034 - 33605963
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||||||||||||||||||||| |||| |||||||||| |||||||| ||| ||||||||| |||||||    
T  33606034 ttataaagtgttcaacctccacttttctattcgatgtgggacatataacttacatttgcacacatcactccc 33605963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 33605713 - 33605647
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||||||||||||||| ||||| |||||| || ||||| |||||||||||||||||||    
T  33605713 ttataaagtgttcaacctccacttttctatctgatgtgagacatatagctcacacttgcacacaaca 33605647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 12092580 - 12092649
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacact 297  Q
    ||||||||||| |||||||||||||| ||||||||||||||| || |||| ||| |||||||||||||||    
T  12092580 cttataaagtgctcaacctccacttttctatccgatgtgggacatctaacacacccttgcacacaacact 12092649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 10074089 - 10074161
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||| ||||||||| |  ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  10074089 cttataaggtgttcaacgtttacttttctatccgatgtgggatatataactcacccttgcacacaacactccc 10074161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 10074461 - 10074533
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||| |||||||||||  ||||| |||||||||||||||  | |||||||||||||||||||||||||||    
T  10074461 cttataaggtgttcaacctttacttttctatccgatgtgggacctctaactcacacttgcacacaacactccc 10074533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 8481985 - 8481920
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||||||||  |||| ||||| ||| |||||||||||||||||||||||||    
T  8481985 ttataaagtgttcaacctccacttttatatctgatgt-ggacatataactcacacttgcacacaaca 8481920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 2579970 - 2580037
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||||    
T  2579970 cttataatgtgttcaacctttactcttttatccgatgtgggacatataactcacacttgcacacaaca 2580037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 12085133 - 12085198
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||||| ||||||||| ||||| ||||  ||| |||||||||||||||||||| ||||    
T  12085133 ttataaagtgttcaaactccacttt-ctatctgatgcaggacatataactcacacttgcacaaaaca 12085198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 2378186 - 2378113
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||| | ||||||||||    
T  2378186 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcaaaccaacactccc 2378113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 10073714 - 10073780
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacac 296  Q
    ||||||| |||||||||||  ||||| ||  ||||||||||| |||||||| |||||||||||||||||    
T  10073714 cttataaggtgttcaacctttacttttct--ccgatgtgggacatataactaacacttgcacacaacac 10073780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 12071790 - 12071851
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca 290  Q
    ||||||||||||||| ||||| ||| ||||| |||| | || ||||||||||||||||||||    
T  12071790 ttataaagtgttcaaactccatttttctatctgatgcgagacatataactcacacttgcaca 12071851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 29518980 - 29518907
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||| | ||||||||||    
T  29518980 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcaaaccaacactccc 29518907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 26544109 - 26544049
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||||||    
T  26544109 cttataacgtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 26544049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 29518563 - 29518503
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||||||    
T  29518563 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 29518503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 32741239 - 32741179
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||||||    
T  32741239 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 32741179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 2578541 - 2578607
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||  ||| |  |||||| ||||||| |||||||||||||||| ||||||||    
T  2578541 cttataaagtgttcaacctttactcttttatccg-tgtgggacatataactcacacttgtacacaaca 2578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 14748437 - 14748496
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    |||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||||||    
T  14748437 ttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 14748496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 7588355 - 7588389
Alignment:
Q  261 gatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||| |||||||||||||||||||||||||    
T  7588355 gatgtgggacatataactcacacttgcacacaaca 7588389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 593807 - 593868
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcac 289  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||| |||||||||||||||    
T  593807 cttataaggtgttcaacctttactcttttatccgatgtgggacatacaactcacacttgcac 593868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 2578960 - 2579004
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||||| |||| |||||| |||||||||| ||||||||||||    
T  2578960 tatccgatgagggacatataaatcacacttgctcacaacactccc 2579004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 3058286 - 3058226
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||| |||||||||    
T  3058286 cttataaggtgttcaacctttactattttatccgatgtgggacatataactaacacttgca 3058226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 3409319 - 3409259
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||| ||||||||| ||||||||||||||||||    
T  3409319 cttataaggtgttcaacctttactattttatctgatgtgggacatataactcacacttgca 3409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 31714720 - 31714669
Alignment:
Q  238 gttcaacctccactttactatccgatgtgggagatataactcacacttgcaca 290  Q
    |||||||||||||||| ||||||||||| ||| |||| | |||||||||||||    
T  31714720 gttcaacctccacttttctatccgatgtaggacatat-agtcacacttgcaca 31714669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 35210264 - 35210204
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  ||||||||||| || ||||||||||||||||||    
T  35210264 cttataaggtgttcaacctttactattttatccgatgtgagacatataactcacacttgca 35210204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 39336327 - 39336392
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    ||||||||||||||||||||||  || ||||||||||||||| |||||||||||||||||||||||    
T  39336327 cttataaagtgttcaacctccaactttctatccgatgtgggacatataactcacacttgcacacaa 39336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 12114660 - 12114727
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  12114660 cttataaggtgttcaacctttacttttctatccgatgtgggatatataacttacacttgcacacaaca 12114727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 21832441 - 21832512
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactcc 299  Q
    ||||||| |||||||||||  ||||| |||||| |||||||| |||||||||||||||||||| ||||||||    
T  21832441 cttataaggtgttcaacctttacttttctatccaatgtgggacatataactcacacttgcacataacactcc 21832512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 47964616 - 47964686
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactc 298  Q
    |||||| || ||||||||||||| || |||||||||| |||| ||| ||||||||||||||||||||||||    
T  47964616 cttatatagcgttcaacctccacatttctatccgatgcgggacatacaactcacacttgcacacaacactc 47964686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 12747870 - 12747917
Alignment:
Q  248 cactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  12747870 cacttttctatccgatgtgggacatataactcacacttgcacacaaca 12747917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 46546423 - 46546490
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||||||||||||| || | |||| |||| ||| ||||||||||||||| |||||||||    
T  46546423 cttataaagtgttcaacctccacatttcaatccaatgtaggacatataactcacacttacacacaaca 46546490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 9240182 - 9240138
Alignment:
Q  255 ctatccgatgtgggagatataactcacacttgcacacaacactcc 299  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  9240182 ctatccgatgtggaacatataactcacacttgcacacaacactcc 9240138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 7767413 - 7767476
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacaca 292  Q
    ||||||||||| ||||||  ||||| ||||||||||||||| |||||||||| |||| ||||||    
T  7767413 ttataaagtgtccaacctttacttttctatccgatgtgggacatataactcagacttacacaca 7767476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 8327936 - 8327897
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  8327936 tatccgatgtgggacatataactcacacttgcacacaaca 8327897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 25739551 - 25739590
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  25739551 tatccgatgtgggacatataactcacacttgcacacaaca 25739590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 31190077 - 31190010
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||| ||||||||||||||||||||    
T  31190077 cttataaggtgttcaacctttactcttttatccgatgtgggacatatcactcacacttgcacacaaca 31190010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 33175762 - 33175829
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||||| ||||| |||||| || |||||||||||||||| ||||||||    
T  33175762 cttataaggtgttcaacctttacttttctatctgatgtgagacatataactcacacttgtacacaaca 33175829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 35946582 - 35946515
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||| ||||||||    
T  35946582 cttataaggtgttcaacctttactgttttatccgatgtgggacatataactcacacttgtacacaaca 35946515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 47965013 - 47965080
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||| | |||| |||||||||||| |||||||||||   | |||||||||||||||||||||||||    
T  47965013 cttatataatgtttaacctccacttttctatccgatgtaaaacatataactcacacttgcacacaaca 47965080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 54017914 - 54017981
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||| ||| |||||||||||||||||||||||||    
T  54017914 cttataaggtgttcaacctttactcttttatccgatgtaggacatataactcacacttgcacacaaca 54017981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 39914311 - 39914245
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||| |||||||||||| ||| |  |||| |||||| || |||||||||||||||||||||||||    
T  39914311 ttataaggtgttcaacctctactgttttatctgatgtgagacatataactcacacttgcacacaaca 39914245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 1634440 - 1634477
Alignment:
Q  255 ctatccgatgtgggagatataactcacacttgcacaca 292  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  1634440 ctatccgatgtgggacatataactcacacttgcacaca 1634477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 2300026 - 2299969
Alignment:
Q  238 gttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| ||||||||||| ||||| || |||||| ||||||| |||||||||||||||||    
T  2300026 gttctacctccacttttctatctgacgtgggacatataacccacacttgcacacaaca 2299969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 29644679 - 29644744
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    ||||||| |||||||||||  ||| |   ||||||||||||| |||||||||||||||||||||||    
T  29644679 cttataaggtgttcaacctttactctttaatccgatgtgggacatataactcacacttgcacacaa 29644744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 32463026 - 32463066
Alignment:
Q  255 ctatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  32463026 ctatccgatgtgggacatataactcacacttgtacacaaca 32463066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 33809109 - 33809173
Alignment:
Q  231 ataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||  | || ||| ||||| ||||||||| |||||||| ||||||||||||||||    
T  33809109 ataaagtgttcaatatgcaattttctatctgatgtgggacatataacttacacttgcacacaaca 33809173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 54451277 - 54451341
Alignment:
Q  231 ataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||||||||| ||| || |  ||||||||| ||||||||||||  |||||||||||    
T  54451277 ataaagtgttcaacctccatttttctttttgatgtgggacatataactcacatatgcacacaaca 54451341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 295
Target Start/End: Complemental strand, 15773220 - 15773185
Alignment:
Q  260 cgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| |||||||||||||||||||||||||    
T  15773220 cgatgtgggacatataactcacacttgcacacaaca 15773185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 29645028 - 29645067
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  29645028 tatccgatgtgggacatataacttacacttgcacacaaca 29645067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 33803358 - 33803417
Alignment:
Q  236 gtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||  ||| |  |||||||||||||| |||||||||||| ||||||||||||    
T  33803358 gtgttcaacctttactattttatccgatgtgggacatataactcacaattgcacacaaca 33803417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 36986046 - 36986101
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacac 283  Q
    ||||||||||  ||||||| |||||| |||| |||||||||| |||||||||||||    
T  36986046 cttataaagttctcaaccttcacttttctattcgatgtgggacatataactcacac 36986101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 37011485 - 37011540
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacac 283  Q
    ||||||||||  ||||||| |||||| |||| |||||||||| |||||||||||||    
T  37011485 cttataaagttctcaaccttcacttttctattcgatgtgggacatataactcacac 37011540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 42342514 - 42342553
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  42342514 tatcggatgtgggacatataactcacacttgcacacaaca 42342553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 43346702 - 43346643
Alignment:
Q  236 gtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||  ||| |  |||||||||||||| ||| |||||||||||||||||||||    
T  43346702 gtgttcaacctttactattttatccgatgtgggacatacaactcacacttgcacacaaca 43346643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 43346889 - 43346956
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||| ||||||||| |||||||||||||||| ||||||||    
T  43346889 cttataaggtgttcaacctttactattttatctgatgtgggacatataactcacacttgtacacaaca 43346956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 45901745 - 45901706
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  45901745 tatccgatgtgggacatataactcacacttgtacacaaca 45901706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 49336785 - 49336852
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| ||| |||||||  ||||| |||||||||||| || || ||||||||||||| ||||||||    
T  49336785 cttataaggtggtcaacctttacttttctatccgatgtgagacatgtaactcacacttgtacacaaca 49336852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 52634708 - 52634669
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  52634708 tatccgatgtgggacatataactcacacttgtacacaaca 52634669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 53577396 - 53577357
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  53577396 tatccgatgtgtgacatataactcacacttgcacacaaca 53577357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 22304298 - 22304233
Alignment:
Q  236 gtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    |||||||||||  ||| |  |||||||||||||| |||||||||||||||||| | ||||||||||    
T  22304298 gtgttcaacctttactattttatccgatgtgggacatataactcacacttgcaaaccaacactccc 22304233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 11661567 - 11661531
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacaca 292  Q
    |||||||||||||| |||||||||||||||| |||||    
T  11661567 tatccgatgtgggacatataactcacacttgtacaca 11661531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 50612578 - 50612610
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgca 288  Q
    |||||||||||||| ||||||||||||||||||    
T  50612578 tatccgatgtgggacatataactcacacttgca 50612610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 28531412 - 28531484
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||| |||||||||||   |||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  28531412 cttataaggtgttcaacctttgcttttctatccgatgtgggacatataactcacacttgcacacaacactccc 28531484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 33561549 - 33561621
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||||||||| |||||||||||| ||||| ||||||| | ||||||||||||||||||||||||| ||||    
T  33561549 cttataaagtgtttaacctccacttttctatctgatgtggaacatataactcacacttgcacacaacattccc 33561621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 33953869 - 33953941
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    |||||| ||||||||||||||||||| ||||| |||||||||  ||||||||||| |||||||||||||||||    
T  33953869 cttatatagtgttcaacctccacttttctatctgatgtgggacttataactcacatttgcacacaacactccc 33953941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 962658 - 962591
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||||| ||||||||||||||| |||||||||||||||||| ||||||    
T  962658 cttataaggtgttcaacctttacttttctatccgatgtgggacatataactcacacttgcatacaaca 962591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 29874122 - 29874185
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacaca 292  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||| |||||    
T  29874122 ttataaagtgttcaacctccacttttctatctgatgtgggacatataacacacacttgtacaca 29874185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 30313232 - 30313171
Alignment:
Q  234 aagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||| |||||||||||| || ||||||| ||| |||||||||||||    
T  30313232 aagtgttcaacctccacttttctatccgatgtgagacatataacacacgcttgcacacaaca 30313171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 40679727 - 40679799
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||| ||||||||||   ||||| ||||||||| ||||| |||||||||||| |||||||||||||||||    
T  40679727 cttataaggtgttcaacccttacttttctatccgatatgggacatataactcacatttgcacacaacactccc 40679799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 29873635 - 29873702
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| || |||| ||| |||||||||||||    
T  29873635 cttataaaatgttcaacctccacttttctatctgatgtgggacatgtaacacacccttgcacacaaca 29873702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 30323520 - 30323457
Alignment:
Q  232 taaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||| ||| ||||| ||| ||||| ||||||| |||||||||||||||||    
T  30323520 taaagtgttcaacctccaattttctatctgatttgggacatataacacacacttgcacacaaca 30323457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 41678465 - 41678539
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatat--aactcacacttgcacacaacactccc 300  Q
    ||||||||||||| ||||||| |||| ||||| |||||| || ||||  ||||||||||||||||||||||||||    
T  41678465 cttataaagtgtttaacctccccttttctatctgatgtgagacatatataactcacacttgcacacaacactccc 41678539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 33954368 - 33954426
Alignment:
Q  237 tgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| |||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  33954368 tgtttaacctcaacttttctatctgatgtgggacatataactcacacttgcacacaaca 33954426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 7598669 - 7598596
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    ||||||| |||||||||||  |||||  |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  7598669 cttataaggtgttcaacctttacttttttatctgatgtgggacatataactcacacttgcacaccaacactccc 7598596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 36785664 - 36785728
Alignment:
Q  231 ataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||||    
T  36785664 ataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaaca 36785728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 42514709 - 42514641
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacac 296  Q
    ||||||| |||||||||||  ||||| ||||| ||||| ||| |||||||||||||||||| |||||||    
T  42514709 cttataaggtgttcaacctttacttttctatctgatgtaggacatataactcacacttgcatacaacac 42514641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 28254335 - 28254402
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||  ||||||||||  ||||| ||||||||||||||| |||||| ||||||| ||||||||||    
T  28254335 cttataagatgttcaacctttacttttctatccgatgtgggacatataagtcacactggcacacaaca 28254402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 31468872 - 31468911
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  31468872 tatccgatgtgggacatataactcacacttgcacacaaca 31468911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 38796344 - 38796383
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  38796344 tatccgatgtgggacatataactcacacttgcacacaaca 38796383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 16542508 - 16542442
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||| |||||||||||  ||| |  ||||||||||||||  ||||||||||||||||||||||||    
T  16542508 ttataaggtgttcaacctttactattttatccgatgtgggacttataactcacacttgcacacaaca 16542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 35580849 - 35580886
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaa 293  Q
    |||||||||||||| |||||||||||||||||||||||    
T  35580849 tatccgatgtgggacatataactcacacttgcacacaa 35580886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 37106248 - 37106175
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||| | ||||||||||    
T  37106248 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcaaaccaacactccc 37106175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 36178703 - 36178763
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||||||    
T  36178703 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 36178763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 3673117 - 3673078
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  3673117 tatccaatgtgggacatataactcacacttgcacacaaca 3673078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 6421445 - 6421378
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||||  |||||||    
T  6421445 cttataaggtgttcaacctttactcttttatccgatgtgggacatataactcacacttgtgcacaaca 6421378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 15880323 - 15880256
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||| | |||||||||||||||| ||||||||    
T  15880323 cttataaggtgttcaacctttactcttttatccgatgtggaacatataactcacacttgtacacaaca 15880256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 29676935 - 29676896
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  29676935 tatccgatgtgggacatataactcacacctgcacacaaca 29676896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 36005978 - 36006044
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| ||||||||| |  ||||| |||| |||||||||| |||||||||||||||| ||||||||    
T  36005978 cttataaggtgttcaacttttacttt-ctattcgatgtgggacatataactcacacttgtacacaaca 36006044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 37632723 - 37632762
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  37632723 tatccgatgtaggacatataactcacacttgcacacaaca 37632762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 38796746 - 38796785
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  38796746 tatcagatgtgggacatataactcacacttgcacacaaca 38796785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 42515076 - 42515000
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagata----taactcacacttgcacacaacactccc 300  Q
    ||||||| ||||| |||||  ||||| ||||||||||||||| |||    |||||||||| ||||||||||||||||    
T  42515076 cttataaggtgtttaacctttacttttctatccgatgtgggacatacatataactcacacctgcacacaacactccc 42515000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 16590915 - 16590881
Alignment:
Q  261 gatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||| |||||||||||||||||||||||||    
T  16590915 gatgtgggacatataactcacacttgcacacaaca 16590881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 3594276 - 3594341
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    |||||||||||||| ||||||||||| |||| || ||||  | ||| ||||||||||| |||||||    
T  3594276 cttataaagtgttcgacctccacttttctattcgttgtgaaacatacaactcacactttcacacaa 3594341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 40163471 - 40163520
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataac 277  Q
    ||||||| |||||||||||  ||||| ||||||||||||||| |||||||    
T  40163471 cttataaggtgttcaacctttacttttctatccgatgtgggacatataac 40163520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 40733577 - 40733512
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    ||||||| ||||||||| |  |||||  |||| ||||||||| |||||||||||||||| ||||||    
T  40733577 cttataaggtgttcaacatttacttttttatctgatgtgggacatataactcacacttgtacacaa 40733512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 5543096 - 5543156
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||| ||||||||| ||||||||||||||||||    
T  5543096 cttataaggtgttcaacctttactattttatcggatgtgggacatataactcacacttgca 5543156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 14745765 - 14745825
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  ||||| |||||||| ||||||||||||||||||    
T  14745765 cttataaggtgttcaacctttactattttatccaatgtgggacatataactcacacttgca 14745825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 37105984 - 37105924
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  ||| |||||||||| ||||||||||||||||||    
T  37105984 cttataaggtgttcaacctttactattttattcgatgtgggacatataactcacacttgca 37105924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 37895186 - 37895226
Alignment:
Q  255 ctatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||||| |||||||||| ||| ||||||||||    
T  37895186 ctatccgatgtgggacatataactcaaactcgcacacaaca 37895226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 41283573 - 41283633
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||||||| ||||| ||||||||||||||||||    
T  41283573 cttataaggtgttcaacctttactattttatccgatatgggacatataactcacacttgca 41283633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 43443107 - 43443147
Alignment:
Q  255 ctatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||| ||||||||| |||||||| ||||||||||||||||    
T  43443107 ctatctgatgtgggacatataacttacacttgcacacaaca 43443147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 19283558 - 19283622
Alignment:
Q  233 aaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacact 297  Q
    |||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  19283558 aaagtgctcaacctccacttttctatccggtgtgggacatataactcacacttgcacacaacact 19283622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 22077593 - 22077665
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||| |||||||||||  ||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  22077593 cttataaggtgttcaacctttacttttctatccgatgtgagacatataactcacacttgcacacaacactccc 22077665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 50469180 - 50469251
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||||||||||||||  |||||| |||| ||||| ||| ||||||||||||||||||||||||||||||    
T  50469180 ttataaagtgttcaacctttactttattatctgatgtaggacatataactcacacttgcacacaacactccc 50469251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 47379889 - 47379943
Alignment:
Q  234 aagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  47379889 aagtgttcaacctccacttttctatccgatgtgggatatataactcacacttgca 47379943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 1188686 - 1188753
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||| | ||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||    
T  1188686 cttataaaatattcaacctccacttttctatccgatatggaacatataactcacacttgcacacaaca 1188753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 22793338 - 22793271
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||| ||||||||| ||||| |||| |||||||||| ||||||||||||||||| |||||||    
T  22793338 cttataaagttttcaacctctacttttctatacgatgtgggacatataactcacacttgctcacaaca 22793271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 39066299 - 39066365
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||| |||||||||||  ||||| ||||||||||||| | |||||||||||||||||||||||||    
T  39066299 ttataaggtgttcaacctttacttttctatccgatgtggaatatataactcacacttgcacacaaca 39066365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 22077247 - 22077292
Alignment:
Q  255 ctatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  22077247 ctatccgatgtgggacatataactcacacttgcacacaacactccc 22077292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 45084442 - 45084378
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacaca 292  Q
    ||||||| |||||||||||  ||| |  |||||||||||||||||||||||||||||||||||||    
T  45084442 cttataaggtgttcaacctttactgttttatccgatgtgggagatataactcacacttgcacaca 45084378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 66570 - 66637
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||||| ||||||||| ||| | |||||||||||||||||||||||||    
T  66570 cttataaggtgttcaacctttacttttctatccgatatggaacatataactcacacttgcacacaaca 66637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 17294637 - 17294570
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||  ||| |  |||||||||||||| |||||||||||||||| ||||||||    
T  17294637 cttataaagtgttcaacctttactcttttatccgatgtgggacatataactcacacttgtacacaaca 17294570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 24600412 - 24600479
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||  ||||||||||  ||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  24600412 cttataatatgttcaacctttacttttctatccgatatgggacatataactcacacttgcacacaaca 24600479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 37850698 - 37850765
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||| ||| |  ||| |||||||||| |||||||||||||||||||||||||    
T  37850698 cttataaggtgttcaacctctactgttttatgcgatgtgggacatataactcacacttgcacacaaca 37850765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 41184523 - 41184590
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||  ||| |  ||||||||||| || |||||||||||||||||||||||||    
T  41184523 cttataaagtgttcaacctttactattttatccgatgtgagacatataactcacacttgcacacaaca 41184590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 5320063 - 5320130
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| ||||||||| |  ||||| ||||||||||||| | |||||||||||||||||| ||||||    
T  5320063 cttataaggtgttcaacttttacttttctatccgatgtggaacatataactcacacttgcatacaaca 5320130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 34364567 - 34364500
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  ||||||||||| || |||||||||||||||||||||||||    
T  34364567 cttataaggtgttcaacctttactattttatccgatgtgagacatataactcacacttgcacacaaca 34364500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 41142432 - 41142365
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||||| ||||    
T  41142432 cttataaggtgttcaacctttactgttttatccgatgtgggacatataactcacacttgcacagaaca 41142365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 44685495 - 44685448
Alignment:
Q  249 actttactatccgatgtgggagatataactcacacttgcacacaacac 296  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  44685495 acttttctatccgatatgggacatataactcacacttgcacacaacac 44685448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 24132084 - 24132150
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||| |||||||||||  ||||| |||||||||| |||| |||||||||||| ||||| ||||||    
T  24132084 ttataaggtgttcaacctttacttttctatccgatgagggacatataactcacagttgcatacaaca 24132150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 1187462 - 1187527
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    |||||||| |||| ||||||||||||  ||| ||||||| || |||||| ||||||||||||||||    
T  1187462 cttataaaatgtttaacctccacttttatattcgatgtgagacatataattcacacttgcacacaa 1187527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 3537245 - 3537318
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||| | ||||||||||    
T  3537245 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcaaaccaacactccc 3537318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 44290923 - 44290983
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||||||||||||||||||    
T  44290923 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 44290983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 4878863 - 4878796
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||| ||||||| || |||| |  |||||||||||| | |||||||||||| ||||||||||||    
T  4878863 cttataaaatgttcaagcttcactattttatccgatgtggaacatataactcacaattgcacacaaca 4878796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 26661620 - 26661687
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  || ||||||||||| |||||||||||||||| ||||||||    
T  26661620 cttataaggtgttcaacctttactcttttacccgatgtgggacatataactcacacttgtacacaaca 26661687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 31767259 - 31767326
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||| | ||||||| |||||||||||||||||    
T  31767259 cttataaggtgttcaacctttactgttttatccgatgtggaacatataacccacacttgcacacaaca 31767326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 34364957 - 34364918
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  34364957 tatccgatgtgtgacatataactcacacttgcacacaaca 34364918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 34649498 - 34649431
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||| | ||||||    
T  34649498 cttataaggtgttcaacctttactcttttatccgatgtgggacatataactcacacttgtatacaaca 34649431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 35154165 - 35154204
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  35154165 tatctgatgtgggacatataactcacacttgcacacaaca 35154204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 37556143 - 37556104
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  37556143 tatccgatgtgggacatataactcacacttgtacacaaca 37556104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 40082467 - 40082400
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||| ||| ||||||||||||||||| |||||||    
T  40082467 cttataaggtgttcaacctttactattttatccgatgtaggacatataactcacacttgcgcacaaca 40082400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 41157407 - 41157368
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  41157407 tatctgatgtgggacatataactcacacttgcacacaaca 41157368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 50556511 - 50556444
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||| |||||||||||| |||| ||||  |||||| || ||||||| ||||||||||| |||||    
T  50556511 cttataaattgttcaacctccgcttttctatatgatgtgtgatatataacccacacttgcacgcaaca 50556444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 44290584 - 44290629
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    |||||||||||||| |||||||||||||||||| | ||||||||||    
T  44290584 tatccgatgtgggacatataactcacacttgcaaaccaacactccc 44290629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 21378166 - 21378206
Alignment:
Q  255 ctatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||| ||||| |||||||| ||||||||||||||||    
T  21378166 ctatccgatctgggacatataactgacacttgcacacaaca 21378206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 24448337 - 24448265
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    |||||||| |||||||| |||||||| || |  |||||   | |||||||| |||||||||||||||||||||    
T  24448337 cttataaaatgttcaacttccacttttctttgagatgtctaacatataacttacacttgcacacaacactccc 24448265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 30630764 - 30630808
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaacactccc 300  Q
    ||||||||||| || |||||| ||||||||||||| |||||||||    
T  30630764 tatccgatgtgagacatataaatcacacttgcacataacactccc 30630808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 45839660 - 45839620
Alignment:
Q  255 ctatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  45839660 ctatccgatgtgggacatataactcatacttgtacacaaca 45839620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 50051777 - 50051809
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgca 288  Q
    |||||||||||||| ||||||||||||||||||    
T  50051777 tatccgatgtgggacatataactcacacttgca 50051809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 39898 - 39831
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||||| || ||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  39898 cttataaagagtccaaccaccacttttctatccgatgtgggacatataactcacacttgaacacaaca 39831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 39516 - 39452
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaa 293  Q
    ||||||| | |||||||||||||||| |||| || |||| || |||||||||||||||| ||||||    
T  39516 cttataaggagttcaacctccacttttctatgcg-tgtgagacatataactcacacttgaacacaa 39452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 1085714 - 1085781
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||||    
T  1085714 cttataaagtgttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaaca 1085781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 7517640 - 7517573
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||||    
T  7517640 cttataaggtgttcaacctttactcttttatccgatgtgggacatataactcacacttgcacacaaca 7517573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 7554085 - 7554018
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||||||||||    
T  7554085 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaaca 7554018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 10341892 - 10341829
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacac 291  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||||| | | ||||||||    
T  10341892 cttataaagtgttcaacctccacttttctatccgatgtgagacatataacttatatttgcacac 10341829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 8128541 - 8128606
Alignment:
Q  230 tataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||| |||||||||||  | ||| ||||||||| ||||| |||||||||||||||||||||||||    
T  8128541 tataaggtgttcaacctttatttttctatccgatatgggacatataactcacacttgcacacaaca 8128606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 28301641 - 28301709
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaacac 296  Q
    ||||||| ||||||| | |  ||||| |||||||||||| || ||||||||||||||||||||||||||    
T  28301641 cttataaggtgttcagcttttacttttctatccgatgtgagacatataactcacacttgcacacaacac 28301709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 118407 - 118466
Alignment:
Q  236 gtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||  ||||| ||||| ||||||||| |||||||| ||||||||||||||||    
T  118407 gtgttcaacctttacttttctatctgatgtgggacatataacttacacttgcacacaaca 118466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 30245554 - 30245487
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||| ||||||||| |||||||||||||||||||||||||    
T  30245554 cttataaggtgttcaacctttactcttttatctgatgtgggacatataactcacacttgcacacaaca 30245487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 30255399 - 30255332
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| ||||||| |||||||||||||||||    
T  30255399 cttataaggtgttcaacctttactcttttatccgatgtgggacatataacgcacacttgcacacaaca 30255332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 36109015 - 36109082
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  ||||||||||| || |||||||||||||||||||||||||    
T  36109015 cttataaggtgttcaacctttactcttttatccgatgtgagaaatataactcacacttgcacacaaca 36109082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 43241555 - 43241488
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  | |||  |||||||||||| | |||||||||||||||||||||||||    
T  43241555 cttataaggtgttcaacctttatttttttatccgatgtggaacatataactcacacttgcacacaaca 43241488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 45434696 - 45434629
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  |||||  |||||||||||||| |||||||| ||||||| ||||||||    
T  45434696 cttataaggtgttcaacctttacttttttatccgatgtgggacatataacttacacttgtacacaaca 45434629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 30244760 - 30244694
Alignment:
Q  229 ttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||| |||||||||||  ||| |  ||||| |||||||| |||||||||||||||||||||||||    
T  30244760 ttataaggtgttcaacctttactcttttatccaatgtgggacatataactcacacttgcacacaaca 30244694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 37345607 - 37345553
Alignment:
Q  242 aacctccactttactatccgatgtgggagatataactcacacttgcacacaacac 296  Q
    |||||||||||| |||| |||||||||| ||||||||||| ||||||||| ||||    
T  37345607 aacctccactttcctattcgatgtgggacatataactcactcttgcacacgacac 37345553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 36622992 - 36622955
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaa 293  Q
    |||||||||||||| |||||||||||||||||||||||    
T  36622992 tatccgatgtgggacatataactcacacttgcacacaa 36622955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 23475 - 23542
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||| | |||||||||||| ||||||||||||    
T  23475 cttataaggtgttcaacctttactattgtatccgatgtggaacatataactcacaattgcacacaaca 23542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 16569256 - 16569189
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| || ||||||||  ||| | |||||||||||| || |||||||||||||||||| ||||||    
T  16569256 cttataaggtattcaacctttactgttctatccgatgtgagacatataactcacacttgcatacaaca 16569189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 16596406 - 16596473
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| || ||||||||  ||| | |||||||||||| || |||||||||||||||||| ||||||    
T  16596406 cttataaggtattcaacctttactgttctatccgatgtgagacatataactcacacttgcatacaaca 16596473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 22566760 - 22566827
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||| ||||||||||||| ||||||    
T  22566760 cttataaggtgttcaacctttactcttttatccgatgtgggacatattactcacacttgcatacaaca 22566827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 24177467 - 24177428
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  24177467 tatccgatgtgggacatataactcatacttgcacacaaca 24177428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 30244302 - 30244263
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  30244302 tatccgatgtgggacatataactcacacttgtacacaaca 30244263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 30245137 - 30245070
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||||| | |||||||||||||||| ||||||||    
T  30245137 cttataaggtgttcaacctttactcttttatccgatgtggaacatataactcacacttgtacacaaca 30245070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 36534882 - 36534949
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||| ||| |  ||||||| |||||| |||||| | ||||||||||||||||    
T  36534882 cttataaggtgttcaacctctactgttttatccgaggtgggacatataagttacacttgcacacaaca 36534949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 37345978 - 37345904
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccg--atgtgggagatataactcacacttgcacacaacactccc 300  Q
    |||||||| |||| |||||||||||| ||||| |  || ||  | ||||||||||||||||||||||||||||||    
T  37345978 cttataaaatgtttaacctccacttttctatcagatatatgacatatataactcacacttgcacacaacactccc 37345904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 40094520 - 40094563
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaacactcc 299  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||    
T  40094520 tatctgatgttggacatataactcacacttgcacacaacactcc 40094563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 41910720 - 41910759
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  41910720 tatccgatgtgggacatataactcacacttacacacaaca 41910759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 37533108 - 37533181
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    ||||||| |||||||||||  ||| |  ||||| |||||||| |||||||||||||||||| | ||||||||||    
T  37533108 cttataaggtgttcaacctttactattttatccaatgtgggacatataactcacacttgcaaaccaacactccc 37533181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 15902360 - 15902296
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacaca 292  Q
    |||||||||||||||||||||||||| | ||||||| |   | |||||||||| |||| ||||||    
T  15902360 cttataaagtgttcaacctccactttcccatccgatctacaacatataactcaaacttacacaca 15902296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 29157625 - 29157565
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgca 288  Q
    ||||||| |||||||||||  ||| |  |||||| ||||||| ||||||||||||||||||    
T  29157625 cttataaggtgttcaacctttactattttatccggtgtgggacatataactcacacttgca 29157565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 5417 - 5350
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| | ||||||||||||| | |||||||||||||||||||||||||    
T  5417 cttataaggtgttcaacctttactgttctatccgatgtggaacatataactcacacttgcacacaaca 5350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 5456 - 5389
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  |||||||||| ||| |||||||||||||||||||||||||    
T  5456 cttataaggtgttcaacctttactattttatccgatgtaggacatataactcacacttgcacacaaca 5389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 5837 - 5770
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  ||||||||||| || |||||||||||||||||||||||||    
T  5837 cttataaggtgttcaacctttactattttatccgatgtgcgacatataactcacacttgcacacaaca 5770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 240 - 313
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcaca-caacactccc 300  Q
    ||||||| |||||||||||  ||| |  |||||||||||||| |||||||||||||||||| | ||||||||||    
T  240 cttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcaaaccaacactccc 313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 1204 - 1271
Alignment:
Q  228 cttataaagtgttcaacctccactttactatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    ||||||| |||||||||||  ||| |  ||||| |||||||| |||||||||||||||| ||||||||    
T  1204 cttataaggtgttcaacctttactcttttatccaatgtgggacatataactcacacttgtacacaaca 1271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 3111 - 3150
Alignment:
Q  256 tatccgatgtgggagatataactcacacttgcacacaaca 295  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  3111 tatccgatgtgggacatataactcacacctgcacacaaca 3150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University