View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_36 (Length: 319)
Name: NF17264_low_36
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 2769813 - 2769750
Alignment:
| Q |
239 |
aaagccttcttgccaccactctcataaacccatttcatcaaggaagccacgaaatagacaacaa |
302 |
Q |
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| T |
2769813 |
aaagccttcttgccaccactctcataaacccatttcatcaaggaagccacgaaatagacaacaa |
2769750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 2764543 - 2764496
Alignment:
| Q |
121 |
gagtcgacttggctgccatcaactcacttaacataaacggttctaaac |
168 |
Q |
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| T |
2764543 |
gagtcgacttggctacgatcaactcacttaatataaacggttctaaac |
2764496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 2760082 - 2759989
Alignment:
| Q |
176 |
actatcatagtgtatcttacgacaatttttcaattggtattatttacagcgccaagcacaaccaaagccttcttgccaccactctcataaaccc |
269 |
Q |
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| T |
2760082 |
actatcatcgtgtatcttacaacactgtttctattggtgttcattacagcaacaagaataaccaaagccttcttgctaccacactcttaaaccc |
2759989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 2760188 - 2760131
Alignment:
| Q |
111 |
ccaatatttggagtcgacttggctgccatcaactcacttaacataaacggttctaaac |
168 |
Q |
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| T |
2760188 |
ccaatgtttggagtcgacttagcttccatcaagtcacttaatataaactgttctaaac |
2760131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 2769333 - 2769240
Alignment:
| Q |
176 |
actatcatagtgtatcttacgacaatttttcaattggtattatttacagcgccaagcacaaccaaagccttcttgccaccactctcataaaccc |
269 |
Q |
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| T |
2769333 |
actatcatcctgtatcttacgacactgtttctattggtgttagttacatcaacaagaataaccatagccttcttgctaccacactcttaaaccc |
2769240 |
T |
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