View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_39 (Length: 312)
Name: NF17264_low_39
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 40805475 - 40805204
Alignment:
| Q |
29 |
ttaaaaatactctactatcaaatgtgagactctagagttttttattttcaattcagacacactagt--atactccaatgttccaataattctcaaccctt |
126 |
Q |
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| T |
40805475 |
ttaaaaatactctactatcgaatgtcagactctagagttttttattttcaattcacacacactagtgtatactccaatgttccaataattctcaaccctt |
40805376 |
T |
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| Q |
127 |
aatgaaagcttcggctatagattctttaaaacagaacaaaaaatcaacaattagtttaatttgaaaattcttcgatcaaatgtgtttgaaattaacttac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
40805375 |
aatgaaagcttcggctatagattctttaaaacagaacaaaaaatcaacaattagtttaatttgaaattttttcgatcaaatgtgtttgaaattaacttac |
40805276 |
T |
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| Q |
227 |
agatgatttgtcttcgagatttcgctcatcaacaaaaacacgagcagcagcagcctaccaatgattatatgt |
298 |
Q |
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| T |
40805275 |
agatgatttttctttgagatttcgctcatcaacaaaaacacgagcagcagcagcctaccaatgattatatgt |
40805204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 30613476 - 30613528
Alignment:
| Q |
35 |
atactctactatcaaatgtgagactctagagttttttattttcaattcagacac |
88 |
Q |
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| T |
30613476 |
atactttactatccaatgtgagactctagag-tttttatttccaattcacacac |
30613528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 35954792 - 35954744
Alignment:
| Q |
35 |
atactctactatcaaatgtgagactctagagttttttattttcaattca |
83 |
Q |
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||||||||||| | || ||| || ||||||||||||||||||||||||| |
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| T |
35954792 |
atactctactaaccaaagtgggagtctagagttttttattttcaattca |
35954744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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