View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_4 (Length: 652)
Name: NF17264_low_4
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 22 - 525
Target Start/End: Complemental strand, 38041115 - 38040613
Alignment:
| Q |
22 |
cagcatgttataaaagacatgataatggnnnnnnnnncaaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgtt |
121 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
38041115 |
cagcatgttataaaagacatgataatggtttttttt-caaagcaaaagagattaatattaattttttttcataggagattaatactattaaaactttgtt |
38041017 |
T |
|
| Q |
122 |
tgagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagctaattaaaacaca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38041016 |
tgagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagctaattaaaacaca |
38040917 |
T |
|
| Q |
222 |
gaccaacaaagaaagtttatcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgca |
321 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38040916 |
gaccaacagagaaagtttatcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgca |
38040817 |
T |
|
| Q |
322 |
acgtaaagttcttccattgacaagacaagattctctcagagattgctcttccttaatctttctttgattcttgaagactgcaacaagtttaattgattag |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
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| T |
38040816 |
acgtaaagttcttccattgacaagacaagattctctcagagattcctcttccttaatttttttctgattcttgaagactgcaacaagtttaattgattag |
38040717 |
T |
|
| Q |
422 |
aaaacaaattttgataagaaaaaatttaactagagatcaaagttattttaaggcgtaaaaatgaaatttgttactactaaatgaaataacgaaattaaaa |
521 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38040716 |
aaaacaaattttgataagaaaaaatttaactagcgatcaaagttatttaaaggcgtaaaaatgaaatttgatactactaaatgaaataacgaaattaaaa |
38040617 |
T |
|
| Q |
522 |
taag |
525 |
Q |
| |
|
|||| |
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|
| T |
38040616 |
taag |
38040613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 38040549 - 38040501
Alignment:
| Q |
589 |
ctgttagcccatggctcctagtcctagaaaaaatgtacatgtatatatc |
637 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38040549 |
ctgttagcccatggctcctagtcctagaaaaaatgtacatgtatatatc |
38040501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 241 - 515
Target Start/End: Complemental strand, 31837244 - 31836967
Alignment:
| Q |
241 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
31837244 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
31837145 |
T |
|
| Q |
341 |
acaagacaagattctctcagagattgctcttccttaatctttctttgattcttga---agactgcaacaagtttaattgattagaaaacaaattttgata |
437 |
Q |
| |
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||| |||||| ||||||||| |||||||||||||||| ||||| ||||||||| | |||||||||||||| |||||||||||||||||||| ||| |
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| T |
31837144 |
ccaacacaagactctctcagaaattgctcttccttaatttttctctgattcttgtgataaactgcaacaagtttcgttgattagaaaacaaattttaata |
31837045 |
T |
|
| Q |
438 |
agaaaaaatttaactagagatcaaagttattttaaggcgtaaaaatgaaatttgttactactaaatgaaataacgaaa |
515 |
Q |
| |
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| ||||||| ||||||| ||||||||||||| | || |||||||||||||||||||||||||||| || |||||||| |
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| T |
31837044 |
aaaaaaaatataactagccatcaaagttatttaatggtgtaaaaatgaaatttgttactactaaataaagtaacgaaa |
31836967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 241 - 515
Target Start/End: Complemental strand, 31841281 - 31840996
Alignment:
| Q |
241 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
31841281 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
31841182 |
T |
|
| Q |
341 |
acaagacaagattctctcagagattgctcttccttaatctttctttgattctt--------------gaagactgcaacaagtttaattgattagaaaac |
426 |
Q |
| |
|
|| |||||| ||| ||||| ||||||||||||| || | | |||||||| |||||||||||||||||| ||||||||||||| |
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| T |
31841181 |
ac---acaagactctatcagaaattgctcttccttgattgctttctgattcttgtgataattgaagagaagactgcaacaagtttcgttgattagaaaac |
31841085 |
T |
|
| Q |
427 |
aaattttgataagaaaaaatttaactagagatcaaagttattttaaggcgtaaaaatgaaatttgttactactaaatgaaataacgaaa |
515 |
Q |
| |
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|||| || |||||||||||| ||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||| || |||||||| |
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| T |
31841084 |
aaatcttaataagaaaaaatataactagcgatcaaagttatttaatggcgtaaaaataaaatttgttactactaaataaagtaacgaaa |
31840996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 31841533 - 31841309
Alignment:
| Q |
23 |
agcatgttataaaagacatgataatggnnnnnnnnn-caaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgtt |
121 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
31841533 |
agcatgttataaaagacatgataatggttttttttttcaaagcaaaagagattaatattaagtttttt-cagaggagattaatattattaaaactttgtt |
31841435 |
T |
|
| Q |
122 |
tgagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacatgaactacaaccaaatgctagc-taattaaaa |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
31841434 |
tgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctacaaccaaatgctagcttaattaaaa |
31841335 |
T |
|
| Q |
218 |
cacagaccaacaaagaaagtttatca |
243 |
Q |
| |
|
|||| | ||||| ||||||||||||| |
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|
| T |
31841334 |
cacaaagcaacagagaaagtttatca |
31841309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 91 - 243
Target Start/End: Complemental strand, 31837432 - 31837276
Alignment:
| Q |
91 |
cagaggagattaatactattaaaactttgtttgagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacat |
187 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
31837432 |
cagaggagattaatactattacaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacat |
31837333 |
T |
|
| Q |
188 |
gaactacaaccaaatgctagc-taattaaaacacagaccaacaaagaaagtttatca |
243 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||| | ||||| ||||||||||||| |
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|
| T |
31837332 |
gagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatca |
31837276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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