View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_40 (Length: 304)
Name: NF17264_low_40
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 9893334 - 9893441
Alignment:
| Q |
93 |
aaactaagggaactcacctcttatttctggatactttcaaaatccagctccaagtgctactacccaagctcctagctttgagttcttgctccaattcatg |
192 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9893334 |
aaactaagggaactcacctttgatttctggatactttcaaaatccaactccaagtgctactacccaagctcctagctttgagttcttgctccaattcttg |
9893433 |
T |
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| Q |
193 |
ttcttagt |
200 |
Q |
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|||||||| |
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| T |
9893434 |
ttcttagt |
9893441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 9893225 - 9893300
Alignment:
| Q |
17 |
agcattaacaaagttatcaatcattgacaaggggaaactaaattcaacaaaataacctaaaatctgtcaattttct |
92 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9893225 |
agcattaacaaagttatcaagcattgacaatgggaaactaaattcaacaaaataacctaaaatttgtcaattttct |
9893300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 9893436 - 9893472
Alignment:
| Q |
261 |
cttaatccatggtgtttggagtaaggtttgatgatgt |
297 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
9893436 |
cttagtccatggtgtttggagtaaggtttgatgatgt |
9893472 |
T |
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