View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_47 (Length: 294)
Name: NF17264_low_47
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_47 |
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| [»] scaffold0793 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 30871078 - 30870854
Alignment:
| Q |
58 |
gtttaaattgacctacggatgagaaagagcagctctctaatccattatcaatgagtctttacaaaatatataaaagtgtacttacaagaaattagcttaa |
157 |
Q |
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| T |
30871078 |
gtttaaattgacttacgtatgagaaagagtagctctctaatccattatcaataagtctttacaaaatatataaaagtgtacttacaagaaattagcttca |
30870979 |
T |
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| Q |
158 |
ttttatccaaaaacaaatgataatttttaacattttcccaatctcttcgcacaaacaagaacgttaccaacgtgatcaagaaattgttcccaagagaaat |
257 |
Q |
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| T |
30870978 |
ttttatccaaaaacaaatcataacttctaacattttcccaatctcttcgcacaaacaagaacgttaccaacgtgatcaagaaattgttcccaagagcaat |
30870879 |
T |
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| Q |
258 |
ctccaatttatctcatttcttctca |
282 |
Q |
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| T |
30870878 |
ctccaatttatctcatttcttctca |
30870854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30871445 - 30871381
Alignment:
| Q |
1 |
ggtagcatgagtttggatttccttgaagaaggtgtgttgcaaaaattcaaatctcatgtttaaat |
65 |
Q |
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| T |
30871445 |
ggtagcatgagtttggatttccttgaagaaggtgtgttgcgaaaattcaaatttcatgtttaaat |
30871381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 662 - 626
Alignment:
| Q |
96 |
aatccattatcaatgagtctttacaaaatatataaaa |
132 |
Q |
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| T |
662 |
aatccactatcaatgagtctttacaacatatataaaa |
626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 709109 - 709145
Alignment:
| Q |
96 |
aatccattatcaatgagtctttacaaaatatataaaa |
132 |
Q |
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|||||| ||||||||||||||||||| |||||||||| |
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| T |
709109 |
aatccactatcaatgagtctttacaacatatataaaa |
709145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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