View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_5 (Length: 651)
Name: NF17264_low_5
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 20 - 641
Target Start/End: Original strand, 49726704 - 49727325
Alignment:
| Q |
20 |
ggttcgatattctgaaaatcgaaccattcacaatcacaatcaaagacgaccaactccacgatattttgctacaaaaaagctgtgatattctaacatatga |
119 |
Q |
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| T |
49726704 |
ggttcgatattctgaaaatcgaaccattcacaatcacaatcaaagacgaccaactccacgatcttttgctacaaaaaagctgtgatattctaacatatga |
49726803 |
T |
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| Q |
120 |
ttccatgttcacggtcaatacacctttggtttcatctcgtttggaatattacgtaactgttttcggatgcaacagcaacaactcactcgatcttcaacaa |
219 |
Q |
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| T |
49726804 |
ttcaatgttcatggtcaacacacctttggtttcatctcgtttggaatattacgtaactgttttcggatgcaacagcaacaactcactcgatcttcaacaa |
49726903 |
T |
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| Q |
220 |
tactattctgtttctaattctagctccatttgtagagaagatactactactttgtatggtgtttcggattcggatataaagagtaataaaactattgtgg |
319 |
Q |
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| T |
49726904 |
tactattctgtttctaattctagctccatttgtagagaagatactactactttgtatggtgtttcggattcggatataaagagtaataaaactattgtgg |
49727003 |
T |
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| Q |
320 |
ttgtaactgattctgtttccaattctaatcatcttaaaggttgttcaaatgttgagcttccaacgtattcaaaggttaaccgtcttgaacctgctgatct |
419 |
Q |
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| T |
49727004 |
ttgtaactgattctgtttccaattctaatcatcttaaaggttgttcaaatgttgagcttccaacgtattcaaaggttgaccgtcttgaacctgctgatct |
49727103 |
T |
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| Q |
420 |
ttttaaggtgttaagcggtgaaatttccatcaaattacaagtttctcagaattgttctagctgccatgatctttatggtggtcaatgtctacttgataac |
519 |
Q |
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| T |
49727104 |
ttttaaggtgttaagcggtgaaatttccatcaaattacaagtttctcagaattgttctagctgccatgatctttatggtggtcaatgtctacttgataac |
49727203 |
T |
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| Q |
520 |
aatggccagttttattgtaaacaaggtaaggtaccatctcaaattactcaaattattatactctattcttgccacaaattcaatccagattaatgttgtt |
619 |
Q |
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| T |
49727204 |
aatggccagttttattgtaaacaaggtaaggtaccatctcaaattactcaaattattatactctattcttgccacaaattcaatccagattaatgttgtt |
49727303 |
T |
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| Q |
620 |
gggaatttttgtttcgtttcat |
641 |
Q |
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| T |
49727304 |
gggaatttttgtttcgtttcat |
49727325 |
T |
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