View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_60 (Length: 250)
Name: NF17264_low_60
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 1145356 - 1145135
Alignment:
| Q |
14 |
gcaaaggaaggtcaagtggaaacactcattattatcaccac---aatcacactgctaactctgcttctgcaacaacagtttctgcaaggactcattttgg |
110 |
Q |
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| T |
1145356 |
gcaaaggaaggtcaagtggaaacactcattattatcaccaccacaatcacactgctaactctgcttctgcaacaacagtttctgcaaggactcattttgg |
1145257 |
T |
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| Q |
111 |
tgtctcaacattcttcttatgcatgagcttttggctttaatcacattctttcacttccattaattaagtatcatgnnnnnnnattcatttttatgacaat |
210 |
Q |
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| T |
1145256 |
tgtctcaacatttttcttatgcatgagcttttggctttaatcacattatttcacttccattaattaagtatcatgtttttttattcatttttatgacaat |
1145157 |
T |
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| Q |
211 |
acttttataagtatcatgttta |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
1145156 |
acttttataagtatcatgttta |
1145135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 1137077 - 1137002
Alignment:
| Q |
110 |
gtgtctcaacattcttcttatgcatgagcttttggctttaatcacattctttcacttccattaattaagtatcatg |
185 |
Q |
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| T |
1137077 |
gtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccactagtttagtatcatg |
1137002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 1148533 - 1148459
Alignment:
| Q |
75 |
ttctgcaacaacagtttctgcaaggactcattttggtgtctcaacattcttcttatgcatgagcttttggcttta |
149 |
Q |
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| T |
1148533 |
ttctgcaacaacattatctgcagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttggcttta |
1148459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 1133551 - 1133441
Alignment:
| Q |
75 |
ttctgcaacaacagtttctgcaaggactcattttggtgtctcaacattcttcttatgcatgagcttttggctttaatcacattctttcacttccattaat |
174 |
Q |
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| T |
1133551 |
ttctgcagcatcattttatgcagggacttatttttgtttctcaacatttattttatgtgtaatcttttggctttaattaccttgtttcacttccagtagt |
1133452 |
T |
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| Q |
175 |
taagtatcatg |
185 |
Q |
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| T |
1133451 |
taagtatcatg |
1133441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 1181336 - 1181254
Alignment:
| Q |
75 |
ttctgcaacaacagtttctgcaaggactcattttggtgtctcaacattcttcttatgcatgagcttttggctttaatcacatt |
157 |
Q |
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| T |
1181336 |
ttctgcaacaacattatctgcatggcctcatttttgtgtctcaactttgattttgtgtttgagcttttggctttaaacacatt |
1181254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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