View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_61 (Length: 242)
Name: NF17264_low_61
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 24040709 - 24040531
Alignment:
| Q |
20 |
ccaagaccaataatcaacccccaattgacaacgatctcacatccaacaccaccaataactataccactaagacatgttccaacnnnnnnnn-tcgacgtc |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
24040709 |
ccaagaccaataatcaacccccaattgacaacgacttcacatccaacaccaccaataactataccactaagacatgttccaacaaaaaaaaattgacgtc |
24040610 |
T |
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| Q |
119 |
tccacctcatatcccacacccactctccatcaacccaagattccatctccctaaccatctaagactgttgtgaagaaac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24040609 |
tccacctcatatcccacacccactctccatcaacccaagattccatctccctaaccatctaagactgttgggaagaaac |
24040531 |
T |
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