View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17264_low_63 (Length: 239)
Name: NF17264_low_63
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1354976 - 1355192
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1354976 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
1355075 |
T |
|
| Q |
101 |
ctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
1355076 |
ctgggttgtctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggattcgaggaaaggacgaaagaacgcggaattgtttg |
1355175 |
T |
|
| Q |
201 |
gaagacatgggcacctc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1355176 |
gaagacatgggcacctc |
1355192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1361862 - 1362078
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
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|
| T |
1361862 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagcttt |
1361961 |
T |
|
| Q |
101 |
ctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1361962 |
ctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
1362061 |
T |
|
| Q |
201 |
gaagacatgggcacctc |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
1362062 |
gaagacatgggcacctc |
1362078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 20492647 - 20492861
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| ||||| ||||| ||||| | ||| ||||| |||||||||| ||| |||||||||||| | |
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|
| T |
20492647 |
gattcaaaagaatcatcttcggttgtttacattggattcgggagcgagttaaagttaaatcaacaagatctaactgagttagctcatggaattgagcaat |
20492746 |
T |
|
| Q |
101 |
ctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| |||| |||||||||||| ||||||| || || ||||| ||||||||||||||||| ||||||||||| |||||||| |||||| ||||| ||||| |
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|
| T |
20492747 |
ctaggttacctttcttttgggctttgaaaaaccttaaagaaggtacacttgaattacccgaaggatttgaagaaagaacaaaagaatatggaatcgtttg |
20492846 |
T |
|
| Q |
201 |
gaagacatgggcacc |
215 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
20492847 |
gaaaacatgggcacc |
20492861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29954512 - 29954728
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| |||||||||| || ||||||||||||||| |
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|
| T |
29954512 |
gattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaactgagttagcgcatggaattgagcttt |
29954611 |
T |
|
| Q |
101 |
ctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||| ||||| |
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|
| T |
29954612 |
ctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgtttg |
29954711 |
T |
|
| Q |
201 |
gaagacatgggcacctc |
217 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
29954712 |
gaaaacatgggcacctc |
29954728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 51369938 - 51369739
Alignment:
| Q |
4 |
tcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctttctg |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
51369938 |
tcaaaagaatcatcttctgttgtttacattggatttggaagcgagtcaaagttagatcaacaagatttaactgagttagctcatggaattgaactttctg |
51369839 |
T |
|
| Q |
104 |
ggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttggaa |
203 |
Q |
| |
|
|||| |||||||||||| ||||||| ||| ||||| ||| | |||||||||| ||||||| ||||||||||| |||||||| |||||||||||||| |
|
|
| T |
51369838 |
ggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaaagaacaaaagaacgtggaattgtttggaa |
51369739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 11531825 - 11532039
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||| ||| ||| | ||||| ||||| ||| |||||| ||| ||||||||||||||| |
|
|
| T |
11531825 |
gattcaaaagaatcgtcttctgttgtttacattggatttgggagcgagacgaaaataagtcaacaagatctaattgagttagctcatggaattgagcttt |
11531924 |
T |
|
| Q |
101 |
ctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||| |
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|
| T |
11531925 |
ctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaagaatttgaggaaagaacaaaagaacgtggaattgtttg |
11532024 |
T |
|
| Q |
201 |
gaagacatgggcacc |
215 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
11532025 |
gaaaacatgggcacc |
11532039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14622593 - 14622807
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
14622593 |
gattcaaaagaatcatcttctattgtttacattggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagcttt |
14622692 |
T |
|
| Q |
101 |
ctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| |||| || ||||||||| |||| || |||| ||||||||| ||||||||| ||| |||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
14622693 |
ctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttg |
14622792 |
T |
|
| Q |
201 |
gaagacatgggcacc |
215 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
14622793 |
gaaaacttgggcacc |
14622807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 14588935 - 14589137
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
14588935 |
gattcaaaagaatcatcttctattgtttacattggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagcttt |
14589034 |
T |
|
| Q |
101 |
ctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| |||| || ||||||||| |||| || |||| ||||||||| ||||||||| ||| |||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
14589035 |
ctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttg |
14589134 |
T |
|
| Q |
201 |
gaa |
203 |
Q |
| |
|
||| |
|
|
| T |
14589135 |
gaa |
14589137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 12846490 - 12846704
Alignment:
| Q |
1 |
gattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagcttt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| | || ||||| |||| || || ||| ||||||||||||||| |
|
|
| T |
12846490 |
gattcaagagaatcatcttccgttgtttacattggatttgggagcgagttgaggttaacgcaaaaagatctaaccgaattagctcatggaattgagcttt |
12846589 |
T |
|
| Q |
101 |
ctgggttgcctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttg |
200 |
Q |
| |
|
|| |||| |||||||||||| ||||||| || || ||| ||||||||||||| |||||| ||||||| || || |||| |||||||| ||||||||||| |
|
|
| T |
12846590 |
ctaggttacctttcttttgggctttgaaaaacctaaaaaagggtacacttgagttacctaaaggattcgaagatcgaaccaaagaacgtggaattgtttg |
12846689 |
T |
|
| Q |
201 |
gaagacatgggcacc |
215 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
12846690 |
gaaaacatgggcacc |
12846704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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