View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17264_low_70 (Length: 224)

Name: NF17264_low_70
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17264_low_70
NF17264_low_70
[»] chr2 (3 HSPs)
chr2 (12-221)||(22299261-22299470)
chr2 (12-221)||(24807189-24807398)
chr2 (37-197)||(23732576-23732735)
[»] chr5 (1 HSPs)
chr5 (24-221)||(29950795-29950992)
[»] chr7 (2 HSPs)
chr7 (12-212)||(40999123-40999323)
chr7 (125-194)||(21585732-21585801)
[»] chr1 (2 HSPs)
chr1 (12-212)||(20189701-20189901)
chr1 (37-197)||(22063158-22063318)
[»] scaffold1778 (1 HSPs)
scaffold1778 (61-221)||(1210-1370)
[»] chr4 (3 HSPs)
chr4 (17-221)||(15018549-15018753)
chr4 (24-212)||(19457179-19457369)
chr4 (37-212)||(19458894-19459068)
[»] chr3 (2 HSPs)
chr3 (119-221)||(16348059-16348161)
chr3 (25-212)||(16346257-16346444)
[»] scaffold0146 (1 HSPs)
scaffold0146 (101-221)||(8570-8690)
[»] chr6 (3 HSPs)
chr6 (101-189)||(20417008-20417096)
chr6 (101-212)||(20416048-20416159)
chr6 (101-212)||(20418620-20418731)
[»] scaffold0083 (1 HSPs)
scaffold0083 (101-203)||(34302-34404)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 22299470 - 22299261
Alignment:
Q  12 tttcattcctcctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatccc 111  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22299470 tttccttccacctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatccc 22299371  T
Q  112 aacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctcctt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22299370 aacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttctcaacatttttctcttccttttccatctcattctcctt 22299271  T
Q  212 tgctactcct 221  Q
    | || |||||    
T  22299270 ttcttctcct 22299261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 24807189 - 24807398
Alignment:
Q  12 tttcattcctcctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatccc 111  Q
    |||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24807189 tttccttccacctgttgggaaaaagtttcttcgttctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatccc 24807288  T
Q  112 aacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctcctt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  24807289 aacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttctcaacatttttctcttccatttccatctcattctcctt 24807388  T
Q  212 tgctactcct 221  Q
    | || |||||    
T  24807389 ttcttctcct 24807398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 23732576 - 23732735
Alignment:
Q  37 tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaattt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| ||    
T  23732576 tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacacttgaaaacactaa-caactt 23732674  T
Q  137 agaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttcc 197  Q
    |||||||||||||||||||||||||||  |||||||  |||||||||||||||||||||||    
T  23732675 agaagaaggtactaatgtaatagtagggaaaaacttcccaacatttttctcttccttttcc 23732735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 29950992 - 29950795
Alignment:
Q  24 tgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29950992 tgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttaaaaa 29950893  T
Q  124 cacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctcctttgctactcct 221  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||| || |||||    
T  29950892 cacaaaccaacttagaagaaggtactaatgtaatagtaggccaaaacttcctaacatttttctcttccttttccttctcattctccttttcttctcct 29950795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 40999123 - 40999323
Alignment:
Q  12 tttcattcctcctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatccc 111  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  40999123 tttccttccacctgttgagaaaaagtttcttcgttctctttgtttccttcataacataaagaaatgttaagcaattgaataatattagaagaagaatccc 40999222  T
Q  112 aacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctcctt 211  Q
    || |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40999223 aaaatttgaaaacacaaaccaatttagaagaagctactaatgtcatagtaggccaaaacttctcaacatttttctcttccttttccatctcattctcctt 40999322  T
Q  212 t 212  Q
    |    
T  40999323 t 40999323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 21585732 - 21585801
Alignment:
Q  125 acaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttt 194  Q
    |||||| |||||||| |||||||||| | |  ||||||||||||||||  ||||| ||||||||||||||    
T  21585732 acaaactaatttagatgaaggtactagtattgtagtaggccaaaacttcccaacaattttctcttccttt 21585801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 20189701 - 20189901
Alignment:
Q  12 tttcattcctcctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatccc 111  Q
    |||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20189701 tttccttccacctgttgagaaaaagtttattcattctctttgtttccttcacgacataaagaaatgttaggcaattgaataatattagaagaacaatccc 20189800  T
Q  112 aacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctcctt 211  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||  ||||||||||||||||||||||| |||||||||||||    
T  20189801 aacatttgaaaacacaaaccaacttagaagaatgtactaatgtaatagtagggaaaaacttcccaacatttttctcttccttttccttctcattctcctt 20189900  T
Q  212 t 212  Q
    |    
T  20189901 t 20189901  T

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Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 22063158 - 22063318
Alignment:
Q  37 tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaattt 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  22063158 tttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatctgaaaacacaaaccaactt 22063257  T
Q  137 agaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttcc 197  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  22063258 agaagaaggtactaatgtaatagtaggccaaaacttcccaacatttttctcttccttttcc 22063318  T

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Target: scaffold1778 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold1778
Description:

Target: scaffold1778; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 1370 - 1210
Alignment:
Q  61 catgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1370 catgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagt 1271  T
Q  161 aggccaaaacttgtcaacatttttctcttccttttccatctcattctcctttgctactcct 221  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||    
T  1270 aggccaaaacttctcaacatttttctcttccttttccatctcattctccttttcttctcct 1210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 15018549 - 15018753
Alignment:
Q  17 ttcctcctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacat 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15018549 ttccacctgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacat 15018648  T
Q  117 ttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctcctttgcta 216  Q
    || |||||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||||| |||||||   | ||| |||||||||||||| ||     
T  15018649 ttaaaaacacaaaccaacttagaagaaggtactagtgtaatagtaggccaaaacttcccaacattattctctttactatccttctcattctccttttctt 15018748  T
Q  217 ctcct 221  Q
    |||||    
T  15018749 ctcct 15018753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 19457369 - 19457179
Alignment:
Q  24 tgttgagaaaaagtttcttcattctctttgtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaa 123  Q
    ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457369 tgttgagaaattttttcttcattctctttgtttccttcgtgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaa 19457270  T
Q  124 cacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacattttt--ctcttccttttccatctcattctccttt 212  Q
    |||||||||| ||| |||||||||||||| |||||||||| ||||||||  ||||||||||  |||||||||||||  || ||||||||||    
T  19457269 cacaaaccaacttataagaaggtactaatttaatagtaggtcaaaacttcccaacatttttctctcttccttttcctacttattctccttt 19457179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 19459068 - 19458894
Alignment:
Q  37 tttcttcattctcttt-gtttccttcatgacataaagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaaaacacaaaccaatt 135  Q
    |||||||||||||||| ||||||||||| |||||||||||| |  |||||||||||||||| | ||||| |||||||||||||||||||||||||||| |    
T  19459068 tttcttcattctcttttgtttccttcattacataaagaaattt--ggcaattgaataatataaaaagaaaaatcccaacatttgaaaacacaaaccaact 19458971  T
Q  136 tagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctccttt 212  Q
    |||||||| ||||||||| ||||||||||||||| ||  |||||| |||||||||||||||| ||||| ||||||||    
T  19458970 tagaagaatgtactaatgcaatagtaggccaaaattttccaacatatttctcttccttttccttctcaatctccttt 19458894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 16348161 - 16348059
Alignment:
Q  119 gaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctcctttgctact 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  16348161 gaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctccttttcttct 16348062  T
Q  219 cct 221  Q
    |||    
T  16348061 cct 16348059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 16346257 - 16346444
Alignment:
Q  25 gttgagaaaaagtttcttcattctctttgtttccttcatgacata---aagaaatgttaggcaattgaataatattagaagaagaatcccaacatttgaa 121  Q
    |||||||||||  |||||||||  ||| |||||||||||||  ||   |||||| ||||||  |||| | ||||||   ||||||| |||||||||| |     
T  16346257 gttgagaaaaaacttcttcatttgcttggtttccttcatgagttaaagaagaaaggttaggagattgcaaaatatt---agaagaaccccaacatttaac 16346353  T
Q  122 aacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatctcattctccttt 212  Q
     ||||| ||||| || || |||||||||| |||||||||||||||||||||  |||||||||||||||| ||| || ||||| || |||||    
T  16346354 tacacataccaactttgatgaaggtactagtgtaatagtaggccaaaacttcccaacatttttctcttcatttaccttctcactcaccttt 16346444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 8690 - 8570
Alignment:
Q  101 agaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatc 200  Q
    |||||||| |||||| || |  ||||| ||||| || || |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8690 agaagaattccaacaattaactacacataccaactttgatgaaggtactagtgtaatagtaggccaaaacttctcaacatttttctcttccttttccatc 8591  T
Q  201 tcattctcctttgctactcct 221  Q
    |||||||| ||| || |||||    
T  8590 tcattctctttttcttctcct 8570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 20417096 - 20417008
Alignment:
Q  101 agaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctctt 189  Q
    |||||||||||||||||| |  ||||| ||||| || || |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  20417096 agaagaatcccaacatttaactacacataccaactttgatgaaggtactaatgtaatagtaggccaaaacatcccaacatttttctctt 20417008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 20416048 - 20416159
Alignment:
Q  101 agaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatc 200  Q
    |||||||||||||||||| |  ||||| ||||| || || ||||||| |||||||||||||||||||||| |  |||||||||||||||| ||| || ||    
T  20416048 agaagaatcccaacatttaactacacataccaactttgatgaaggtattaatgtaatagtaggccaaaacatcccaacatttttctcttcatttaccttc 20416147  T
Q  201 tcattctccttt 212  Q
    ||| || |||||    
T  20416148 tcactcaccttt 20416159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 20418620 - 20418731
Alignment:
Q  101 agaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatc 200  Q
    ||||||| |||||||||| |  ||||| ||||| || || |||||||||| |||||||||||||||||||||  |||||||||||||||| ||| || ||    
T  20418620 agaagaaccccaacatttaactacacataccaactttgatgaaggtactagtgtaatagtaggccaaaacttcccaacatttttctcttcatttaccttc 20418719  T
Q  201 tcattctccttt 212  Q
    ||| || |||||    
T  20418720 tcactcaccttt 20418731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 34404 - 34302
Alignment:
Q  101 agaagaatcccaacatttgaaaacacaaaccaatttagaagaaggtactaatgtaatagtaggccaaaacttgtcaacatttttctcttccttttccatc 200  Q
    |||||||| |||||| || |  ||||| ||||| || || |||||||||| |||||||||||||||||||||  |||||||||||||||| ||| || ||    
T  34404 agaagaattccaacaattaactacacataccaactttgatgaaggtactagtgtaatagtaggccaaaacttcacaacatttttctcttcatttaccttc 34305  T
Q  201 tca 203  Q
    |||    
T  34304 tca 34302  T

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