View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17264_low_8 (Length: 569)
Name: NF17264_low_8
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17264_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 51320478 - 51319933
Alignment:
| Q |
1 |
tcatcagcccctgaggacggtacgtttgtttaacaacatcccaacctatgtatgtatgtatttctatatatatatttcacaggaaccttgatgtctattt |
100 |
Q |
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| T |
51320478 |
tcatcagctcctgaggacggtacgtttgtttaacaacatcccaacctatgtat----gta----tatctatatatttcacaggaaccttgatgtctattt |
51320387 |
T |
|
| Q |
101 |
ttgtagtgcgacctcatcatctatcaacaacgtttgtttagttaattttaagtcaaattttattggatcctttttatacatgtttgggaatgtaatgata |
200 |
Q |
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| T |
51320386 |
ttgtagtgcgacctcatcatctatcaacaacgtttgtttagttaa-tttaagtcaaattttattggatcctttttatacatgtttgggaatgtaatgata |
51320288 |
T |
|
| Q |
201 |
atatgaagttcaaaatatccaggaacatataaaaggtgtatttctatggcagcagcaacaggggattgggcaatagcttcctcttacgataaaactcatc |
300 |
Q |
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| T |
51320287 |
atatgaagttcaaaatatccaggaacatataaaaggtgtatttctatggcagcagcaacaggggattgggcaatagcttcctcttacgataaaactcatc |
51320188 |
T |
|
| Q |
301 |
ctaactggatatctactcccttgactgtggatggagacacagctctccatattgcagtgagaatggaagaaactaaatttgttgaaaagttggttgaacg |
400 |
Q |
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| T |
51320187 |
ctaactggatatctactcccttgactgtggatggagacacagctctccatattgcagtgagaatggaagaaactaaatttgttgaaaagttggttgaacg |
51320088 |
T |
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| Q |
401 |
tacgagcaaaatagatatggaaattcgtagaaccgatggaaatactgttttttgtttagctgctgtttcaggaaatgtgaaaattgcaagaattttaagt |
500 |
Q |
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| T |
51320087 |
tactagcaaaaaagatatggaaattcgtagaaccgatggaaatactgtcttttgtttagctgctgtttcaggaaatgtgaaaattgcaagaattttatgt |
51319988 |
T |
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| Q |
501 |
gaaaagaatccagaattggtatggattaaaggccatgaagaacagttaccaattc |
555 |
Q |
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| T |
51319987 |
gaaaagaatccagaattggtatggattaaaggccatgaagaacagttaccaattc |
51319933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 220 - 555
Target Start/End: Complemental strand, 51344275 - 51343940
Alignment:
| Q |
220 |
caggaacatataaaaggtgtatttctatggcagcagcaacaggggattgggcaatagcttcctcttacgataaaactcatcctaactggatatctactcc |
319 |
Q |
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||||||||||||||| | ||||| |||||||||||||| |||||||||| | ||||| || || |||||||||||||||||||||||||||||||| |
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| T |
51344275 |
caggaacatataaaaagattatttgtatggcagcagcaaaaggggattggaataaggcttcatcctatgataaaactcatcctaactggatatctactcc |
51344176 |
T |
|
| Q |
320 |
cttgactgtggatggagacacagctctccatattgcagtgagaatggaagaaactaaatttgttgaaaagttggttgaacgtacgagcaaaatagatatg |
419 |
Q |
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| T |
51344175 |
cttgactatggatggagatacagctcttcatattgcagtgaggatggaaaaaatcaaatttgttgaaaagttggttaaacgtacaaacaaaaaagatatg |
51344076 |
T |
|
| Q |
420 |
gaaattcgtagaaccgatggaaatactgttttttgtttagctgctgtttcaggaaatgtgaaaattgcaagaattttaagtgaaaagaatccagaattgg |
519 |
Q |
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| T |
51344075 |
gaaattcgtagagttgatggaaatactgtcttttgtttagctgctatttcaggaaacgtgaaaattgcaagaattttatgtgaaaagaatccagaattgg |
51343976 |
T |
|
| Q |
520 |
tatggattaaaggccatgaagaacagttaccaattc |
555 |
Q |
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| T |
51343975 |
tatggattaaaggtcatgaagaaaagttgccaattc |
51343940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 368
Target Start/End: Complemental strand, 51314435 - 51314288
Alignment:
| Q |
221 |
aggaacatataaaaggtgtatttctatggcagcagcaacaggggattgggcaatagcttcctcttacgataaaactcatcctaactggatatctactccc |
320 |
Q |
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|||| |||||||||| |||||| ||||||||| ||| ||||||||||||| || ||||| || || |||||| |||||||||| |||||||||||| || |
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| T |
51314435 |
aggagcatataaaagtagtatttgtatggcagctgcatcaggggattgggctatggcttcatcatatgataaatctcatcctaattggatatctactacc |
51314336 |
T |
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| Q |
321 |
ttgactgtggatggagacacagctctccatattgcagtgagaatggaa |
368 |
Q |
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| T |
51314335 |
ttaactgcaaatggagacacggcactccacattgcggtggcaatggaa |
51314288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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