View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17264_low_9 (Length: 532)

Name: NF17264_low_9
Description: NF17264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17264_low_9
NF17264_low_9
[»] chr8 (3 HSPs)
chr8 (18-522)||(9675242-9675746)
chr8 (40-522)||(9692286-9692768)
chr8 (225-393)||(21463943-21464111)
[»] chr4 (3 HSPs)
chr4 (27-522)||(35162513-35162997)
chr4 (38-522)||(35155493-35155978)
chr4 (221-525)||(15556084-15556388)
[»] chr3 (36 HSPs)
chr3 (207-426)||(5156416-5156638)
chr3 (72-425)||(16025656-16026012)
chr3 (221-411)||(47397057-47397247)
chr3 (221-426)||(46526171-46526379)
chr3 (223-426)||(5160445-5160651)
chr3 (221-427)||(45883485-45883688)
chr3 (221-424)||(46236540-46236746)
chr3 (221-522)||(46479865-46480166)
chr3 (240-425)||(46539169-46539354)
chr3 (221-388)||(46544681-46544848)
chr3 (68-176)||(46236374-46236482)
chr3 (221-522)||(46484123-46484416)
chr3 (221-409)||(46498136-46498324)
chr3 (221-522)||(46474004-46474299)
chr3 (83-177)||(47413795-47413889)
chr3 (302-411)||(51944076-51944185)
chr3 (221-409)||(46548752-46548940)
chr3 (76-177)||(46480222-46480323)
chr3 (221-281)||(4581137-4581197)
chr3 (221-281)||(4613594-4613654)
chr3 (466-522)||(45883729-45883785)
chr3 (301-361)||(46532155-46532215)
chr3 (301-409)||(46554013-46554121)
chr3 (72-163)||(46474366-46474457)
chr3 (221-280)||(46532224-46532283)
chr3 (336-409)||(4613703-4613776)
chr3 (214-406)||(46490900-46491086)
chr3 (221-323)||(47413945-47414053)
chr3 (72-177)||(51944319-51944424)
chr3 (72-180)||(5156671-5156779)
chr3 (455-522)||(47414176-47414243)
chr3 (203-274)||(51944216-51944287)
chr3 (336-409)||(4581246-4581319)
chr3 (459-520)||(5160351-5160412)
chr3 (315-407)||(45903145-45903237)
chr3 (76-160)||(46491152-46491236)
[»] chr2 (3 HSPs)
chr2 (256-436)||(20144790-20144970)
chr2 (256-436)||(20168804-20168984)
chr2 (256-436)||(20359300-20359480)
[»] chr7 (5 HSPs)
chr7 (234-354)||(17708516-17708636)
chr7 (234-328)||(16722419-16722513)
chr7 (234-328)||(17699433-17699527)
chr7 (234-328)||(17736196-17736290)
chr7 (234-354)||(17718340-17718460)


Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 9675242 - 9675746
Alignment:
Q  18 aatgagctcccctcgctttctatgagtgatgcaattgattgcggtttgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675242 aatgagctcccctcgctttctatgagtgatgcaattgattgcggtttgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatga 9675341  T
Q  118 ttgtttgggtcgaatcttctctaattagaaaaaggaaagggtgatcggctagaaagtctattccagttggcacacacatggcccctattccagcattggc 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||  |||||||||    
T  9675342 ttgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataaagtctattccagttggcgcacacaagacccctattttagcattggc 9675441  T
Q  218 tgtagcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccattttt 317  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675442 tgtagcagcttcagtgccttcctcatttacttcaatggtagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccattttt 9675541  T
Q  318 gtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaatt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9675542 gtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaaat 9675641  T
Q  418 cacctactttcactcgtttataaggaagctttggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttgg 517  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9675642 tacctactttcactcgtttataaggaagcttgggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccaccttttgcatttgg 9675741  T
Q  518 aagaa 522  Q
    |||||    
T  9675742 aagaa 9675746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 40 - 522
Target Start/End: Original strand, 9692286 - 9692768
Alignment:
Q  40 tgagtgatgcaattgattgcggtttgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctct 139  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  9692286 tgagtgatgcaattgattgcggtacgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctct 9692385  T
Q  140 aattagaaaaaggaaagggtgatcggctagaaagtctattccagttggcacacacatggcccctattccagcattggctgtagcagcttcagtgccttcc 239  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| | | | ||  ||||||  ||||||||||||||||||||    
T  9692386 aattagaaataggaaagggtgatcggctataaagtctattccagttggcatacacatggccaccactgcaatattggccttagcagcttcagtgccttcc 9692485  T
Q  240 tcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaag 339  Q
    || |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9692486 tcgtttacttcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaag 9692585  T
Q  340 gtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactttcactcgtttata 439  Q
    ||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  9692586 gtaaactcactcctaactccttcgtcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctattctcactagtttata 9692685  T
Q  440 aggaagctttggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaagaa 522  Q
    |||||||||  |||||||||||||||||||||||||||| || |||||||||||  ||||| |||||||||||||||||||||    
T  9692686 aggaagcttgtgctctaggaactcaaattcagaagccactttctcaaccatagctaatagtacatcttttgcatttggaagaa 9692768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 225 - 393
Target Start/End: Original strand, 21463943 - 21464111
Alignment:
Q  225 gcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaac 324  Q
    ||||| || ||||| || |||||||||||  |||||||||||||||||||||| ||| ||| || |||| |     |||||||||||||||||||||||     
T  21463943 gcttcggtaccttcttcgtttacttcaataaaagacttgtgaaatatgttggacacataaaggttttgagcaattcgagagtccaccatttttgtcaaag 21464042  T
Q  325 ctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaa 393  Q
    ||||   |||||||||||||| ||| |||||||| |||| |||   ||||  |||||||||||| ||||    
T  21464043 ctccttcagagaaaggtaaaaccacgcctagctctttcagcatatcagaacattcaagcccaaaagaaa 21464111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 27 - 522
Target Start/End: Complemental strand, 35162997 - 35162513
Alignment:
Q  27 ccctcgctttctatgagtgatgcaattgattgcggtttgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttggg 126  Q
    |||||| | |||| || ||||||||||||||||||||||||| |||| ||||||            ||||| || ||||| ||||||| |||||||||||    
T  35162997 ccctcgttatctacgaatgatgcaattgattgcggtttgagatgttatgatcac-----------tttgagcacttgtcccgcaaagaggattgtttggg 35162909  T
Q  127 tcgaatcttctctaattagaaaaaggaaagggtgatcggctagaaagtctattccagttggcacacacatggcccctattccagcattggctgtagcagc 226  Q
    |||||||||||||||||||||| | |||||| ||||| |||| |||||||| ||| ||||| | |||| |||||   | | ||    |||||| ||||||    
T  35162908 tcgaatcttctctaattagaaataagaaaggatgatcagctataaagtctactccggttggaatacacttggccataagtgcacagctggctgcagcagc 35162809  T
Q  227 ttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacct 326  Q
    | | ||||||| |||||||||||||||| |||||||||||||||||||||||||  ||| || |||||||||||| ||||||||||||||||||||||||    
T  35162808 tacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagtgagtccaccatttttgtcaaacct 35162709  T
Q  327 ccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactt 426  Q
    ||||||||||||||||||||||||||||| ||||||| ||  |||||||||||||||||| |||||||||||||| ||||||||| |||  ||||||||     
T  35162708 ccagaagagaaaggtaaaatcactcctagatccttcagcacacgagaagtttcaagcccatatgaaaatttgaattttggaattttgaagccacctactg 35162609  T
Q  427 tcactcgtttataaggaagctttggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaagaa 522  Q
     |||||  ||| |||||||| |   |||||||| |||||| |||||||||||||| ||||||| ||| || || ||||||||||||||||||||||    
T  35162608 gcactctattacaaggaagcatgttctctaggagctcaaaatcagaagccaccttctcaaccaaagctgacaggccatcttttgcatttggaagaa 35162513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 38 - 522
Target Start/End: Complemental strand, 35155978 - 35155493
Alignment:
Q  38 tatgagtgatgcaattgattgcggtttgagaagttaagatcacccaacaa-gaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttc 136  Q
    ||||| |||||||||||||||||||||  ||| ||||||||||  | ||| |||| ||||  || ||||||||||||| ||||||||||||| |||||||    
T  35155978 tatgattgatgcaattgattgcggtttcggaaattaagatcacttagcaaagagggttgaacacttgtccggcaaagaggattgtttgggtcaaatcttc 35155879  T
Q  137 tctaattagaaaaaggaaagggtgatcggctagaaagtctattccagttggcacacacatggcccctattccagcattggctgtagcagcttcagtgcct 236  Q
    |||||||| ||| | |||||||||||| |||| |||||||| ||| ||||    || || ||    || |  || | |||||| | |||||| |||||||    
T  35155878 tctaattaaaaataagaaagggtgatcagctataaagtctagtccggttgatctacccaaggtaaataatgtagtactggctgcaacagctttagtgcct 35155779  T
Q  237 tcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagaga 336  Q
    |  || |||||||||||  || |||| ||||||||||||  ||| || |  | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  35155778 ttttcgtttacttcaataaaacacttctgaaatatgttgctaacggagagattttgaccttcaagagagtccaccatttttgtcaaacccccagaagaga 35155679  T
Q  337 aaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactttcactcgttt 436  Q
    ||||||||||||||||||| || |||| |||  |||||| |||||||  | |||||||||||||||||||||||| |||  ||||||||  | ||  |||    
T  35155678 aaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaatcttggaattttgaagccacctactcgcgctgtttt 35155579  T
Q  437 ataaggaagctttggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaagaa 522  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  35155578 ataaggaagcttgtgctctagcaactcaaattcagaagccaccttctcaaccaaagctgatagtccatcttttgcatttggaagaa 35155493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 221 - 525
Target Start/End: Complemental strand, 15556388 - 15556084
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    |||||||||||||||||| || |||||||  ||| ||||||| || |||||||| |||||| | | |||||||||  |||| |||||||||||||| |||    
T  15556388 agcagcttcagtgccttcttcgtttacttggatgaaagacttttggaatatgttagaaacaaacaggtcttgacccgcaagtgagtccaccattttagtc 15556289  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcac 420  Q
    |||||||| | |||||||||||||| ||||||||| ||||||| |||   ||||||||||| ||||||||| |  |||||  ||||||||  ||| ||||    
T  15556288 aaacctccgggagagaaaggtaaaaccactcctaggtccttcagcatatcagaagtttcaaacccaaatgagatattgaactttggaattctgaagtcac 15556189  T
Q  421 ctactttcactcgtttataagg---aagctttggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttgg 517  Q
    | ||||| ||   |||| || |   || |||  | | ||| |||||| |||| ||||||||||||||||||| |||||| |||||||||||||||| |||    
T  15556188 caactttgac---tttagaaagattaaacttacggtgtagtaactcagattctgaagccaccttttcaaccaaagccgagagtccatcttttgcatctgg 15556092  T
Q  518 aagaataa 525  Q
    ||||||||    
T  15556091 aagaataa 15556084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 207 - 426
Target Start/End: Complemental strand, 5156638 - 5156416
Alignment:
Q  207 ccagcattggctgtagcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaag-tcttgaccttcaagag-- 303  Q
    |||||| | |||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||| || |||||||||| | | ||| ||  ||||||      
T  5156638 ccagcactagctgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaaacagaaaggctattgccca-caagagga 5156540  T
Q  304 -agtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcat-tcgagaagtttcaagcccaaatgaaaatttgaat 401  Q
     ||||||||||||||||||||||||||  || |||||||||||||||||||||||| || | ||| ||| |||||||||||| ||||||||| |||||||    
T  5156539 gagtccaccatttttgtcaaacctccacgagtgaaaggtaaaatcactcctagctctttgaacatatcg-gaagtttcaagctcaaatgaaattttgaat 5156441  T
Q  402 cttggaatttggaattcacctactt 426  Q
    |||||||||  ||||||| ||||||    
T  5156440 cttggaattctgaattcaactactt 5156416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 425
Target Start/End: Complemental strand, 16026012 - 16025656
Alignment:
Q  72 taagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaaaaggaaagggtgatcggctagaa 171  Q
    ||||||||| |||||| ||||||||| || || ||  |||||| |||||||| |||  ||||||||||||||||||| | ||||||||| || |||| ||    
T  16026012 taagatcactcaacaaaaggattgagtacttgccctacaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaa 16025913  T
Q  172 agtctattccagttggcacacacatggcccctattccagcat---tggctgtagcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaa 268  Q
    | |||| || ||     |||| | || | || | | |||||    || ||| |||| ||||||| ||||| ||||||||||| ||| |||| ||||||||    
T  16025912 aatctactcgaggacttacacccttgactccgaatacagcagcagtgactgcagcaacttcagttccttcttcatttacttcgatgaaagatttgtgaaa 16025813  T
Q  269 tatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcatt 368  Q
    ||||   |||||| | | |||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||| |||     
T  16025812 tatgcgagaaacaaagaggtcttgatgttcaagaaagtccaccatttttgtcaaacctccaggagagaaaggtaaaactactccaagctccttcagcata 16025713  T
Q  369 cgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctact 425  Q
      ||||||||||| |||||||||||  ||||| |||||||||  ||| |||||||||    
T  16025712 tcagaagtttcaaacccaaatgaaaccttgaaccttggaattctgaaatcacctact 16025656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 221 - 411
Target Start/End: Original strand, 47397057 - 47397247
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    |||| ||| |||||||| |||||||||||||||| || |||| |||||||||||||||||| ||| || ||||||  | ||| |||||| |||||||||     
T  47397057 agcaactttagtgcctttctcatttacttcaatgaaatacttctgaaatatgttggaaacaaaaaggttttgacccgctagaaagtccatcatttttgtt 47397156  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaattt 411  Q
    ||||||||    |||||||||||||||||||||| |||||||| |||   |||||||||||||| || |||||||||||||||||||||||    
T  47397157 aaacctccgagggagaaaggtaaaatcactcctaactccttcaacatatcagaagtttcaagccaaattgaaaatttgaatcttggaattt 47397247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 221 - 426
Target Start/End: Original strand, 46526171 - 46526379
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaag---agagtccaccattttt 317  Q
    ||||||||| |||||| |||||||||||||||||  ||||||||||||||| ||||||||  ||| || ||||| | |  |   ||||||||| || |||    
T  46526171 agcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatattttggaaacgtaaaggttttgacttgcgtgttgagagtccacaatattt 46526270  T
Q  318 gtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaatt 417  Q
    |||||||| ||| |||||||||||||||||||| ||| ||| |||| |||| ||||||| |||||| ||||||||||||||||| ||||||||  ||| |    
T  46526271 gtcaaacccccacaagagaaaggtaaaatcacttctaactctttcaacatttgagaagtgtcaagctcaaatgaaaatttgaattttggaattctgaaat 46526370  T
Q  418 cacctactt 426  Q
    |||||||||    
T  46526371 cacctactt 46526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 223 - 426
Target Start/End: Complemental strand, 5160651 - 5160445
Alignment:
Q  223 cagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagaga---gtccaccatttttgt 319  Q
    |||||||||  ||||| ||||||||||||||| |||| ||||||||||| || ||||| |||| |   | |||  |||||||   |||||||||||||||    
T  5160651 cagcttcagcaccttcttcatttacttcaatgaaagatttgtgaaatattttagaaactgaaaggctatcacccacaagagaagagtccaccatttttgt 5160552  T
Q  320 caaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattca 419  Q
    ||||||| ||  || |||||||||| ||||||||| |||||||| |||   ||||||||||||| ||||||||| ||||||||||||||||  |||||||    
T  5160551 caaaccttcacgagtgaaaggtaaagtcactcctaactccttcagcatatcagaagtttcaagctcaaatgaaattttgaatcttggaattctgaattca 5160452  T
Q  420 cctactt 426  Q
    |||||||    
T  5160451 cctactt 5160445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 221 - 427
Target Start/End: Original strand, 45883485 - 45883688
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    |||||||||||||||||| ||||| ||||||||| |||||| |||||| ||||  |||| | ||| |||||||  |    || |||||||||||||||||    
T  45883485 agcagcttcagtgccttcttcattaacttcaatgaaagactagtgaaaaatgtgagaaatataaaggtcttgatttg---gatagtccaccatttttgtc 45883581  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcac 420  Q
    |||| ||||  |||||||||| ||| |||||||| |||||||| |||   |||||||||||||||||||||||  |||||||||||||||  ||| ||||    
T  45883582 aaacttccacgagagaaaggtgaaaccactcctaactccttcaacatattagaagtttcaagcccaaatgaaacattgaatcttggaattctgaagtcac 45883681  T
Q  421 ctacttt 427  Q
    |||||||    
T  45883682 ctacttt 45883688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 221 - 424
Target Start/End: Original strand, 46236540 - 46236746
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagag---tccaccattttt 317  Q
    |||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| | | || || ||| |||| |||    ||||| ||||||    
T  46236540 agcaacttcagtgccttcttcatttacttcaatgaaagatttgtgaaatatgttggaaacatataggttttcaccctcaaaagaagaatccacaattttt 46236639  T
Q  318 gtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaatt 417  Q
    || |||||||||| ||||||||||||||||||||||| |||||||||| |   || ||||||||  ||||| ||||  |||||||||||||| | ||| |    
T  46236640 gtaaaacctccagcagagaaaggtaaaatcactcctaactccttcatcgtattagtagtttcaattccaaacgaaatattgaatcttggaatcttgaact 46236739  T
Q  418 cacctac 424  Q
    |||||||    
T  46236740 cacctac 46236746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 221 - 522
Target Start/End: Complemental strand, 46480166 - 46479865
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||| || |||||   |   ||||| |||||| ||||||    
T  46480166 agcagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggttttgactaactgaagagttcaccatctttgtc 46480067  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcac 420  Q
    | |||||||  |||||||||||||| ||| ||||||||||| | |||   |||||||||||| ||||||||||  |||||  |||||||    || ||||    
T  46480066 agacctccaccagagaaaggtaaaaccacacctagctcctttagcatatcagaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtcac 46479967  T
Q  421 ctactttcactcgtttataaggaagctttggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaag 520  Q
    |||||| ||||     | | ||||||||  | |  || | |||| ||||||||||||||||||| |||| ||| |  |  ||||||||||||||||||||    
T  46479966 ctacttccactttaccaaatggaagcttgtgttgcagtagctcagattcagaagccaccttttcgaccaaagctgccaacccatcttttgcatttggaag 46479867  T
Q  521 aa 522  Q
    ||    
T  46479866 aa 46479865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 240 - 425
Target Start/End: Complemental strand, 46539354 - 46539169
Alignment:
Q  240 tcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaag 339  Q
    ||||||||||||||  |||||||||| ||||  | ||||||| ||| || ||||| |  | ||||||||||||||||||||||||||||   ||||||||    
T  46539354 tcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccatttttgtcaaacctccttgagagaaag 46539255  T
Q  340 gtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctact 425  Q
    |||||| || |||||||||||| | |||   ||||||||||||| |||| |||| ||||||||||||||||  ||| |||||||||    
T  46539254 gtaaaaccattcctagctccttaagcatattagaagtttcaagctcaaaagaaattttgaatcttggaattctgaagtcacctact 46539169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 221 - 388
Target Start/End: Complemental strand, 46544848 - 46544681
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    |||||||||||| || |  ||||||||||||||  |||||||||| ||||||||||||| |  || || |||| |   | ||||||||||||| ||||||    
T  46544848 agcagcttcagttcccttttcatttacttcaataaaagacttgtggaatatgttggaaatatgaaggttttgatccataggagagtccaccatatttgtc 46544749  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaa 388  Q
    |||||||| | |||||||||||||| ||||||||||||||||| ||  | ||||||||||||||||||    
T  46544748 aaacctcctgtagagaaaggtaaaaccactcctagctccttcagcacgccagaagtttcaagcccaaa 46544681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 46236374 - 46236482
Alignment:
Q  68 aagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaaaaggaaagggtgatcggct 167  Q
    |||||||||||| ||||||| ||||||||| |||||||| ||||||| |||||||  ||||||| |||||||||||||||| |||||||||||||| |||    
T  46236374 aagttaagatcatccaacaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagct 46236473  T
Q  168 agaaagtct 176  Q
    | |||||||    
T  46236474 acaaagtct 46236482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 221 - 522
Target Start/End: Complemental strand, 46484416 - 46484123
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||| |||   |||| ||     | |  ||||| |||||| ||||||    
T  46484416 agcagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatatattggacaca---aagtttt-----tgattagagttcaccatctttgtc 46484325  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcac 420  Q
    | |||||||  |||||||||||||| ||| ||||||||||| | |||   |||||||||||| ||||||||||  |||||  |||||||    || ||||    
T  46484324 agacctccaccagagaaaggtaaaaccacacctagctcctttagcataacagaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtcac 46484225  T
Q  421 ctactttcactcgtttataaggaagctttggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaag 520  Q
    |||||| ||||   | | ||||||||||  | | ||| || |||||||||||||||||||||||||||| |   |  || ||||||||||||||||||||    
T  46484224 ctacttccactttatcaaaaggaagcttgtgttgtagtaaatcaaattcagaagccaccttttcaaccaaacttggaagcccatcttttgcatttggaag 46484125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 409
Target Start/End: Complemental strand, 46498324 - 46498136
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||| ||||| ||||||||| ||| || |||||   ||  ||||| ||||||||| |||    
T  46498324 agcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaacataaaggttttgactcacagcagagttcaccattttagtc 46498225  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaat 409  Q
    |||||||||  || |||||| |||| ||| || |||||||| | |||   ||||||||||||  |||||||||  ||||| ||||||||    
T  46498224 aaacctccattagtgaaaggcaaaaccacgccaagctcctttaacatatcagaagtttcaagttcaaatgaaatattgaaccttggaat 46498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 522
Target Start/End: Complemental strand, 46474299 - 46474004
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    |||||||||||||||||| ||||||||||||||| || | ||||| ||||| ||||| | | |||  | ||||  ||    |||||||||||||||||||    
T  46474299 agcagcttcagtgccttcttcatttacttcaatgaaatatttgtgcaatatattggacataaaaagtttttga--tt----agagtccaccatttttgtc 46474206  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcat-tcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattca 419  Q
    |  ||| ||  |||||||||||||| ||| ||||||||||| | ||| ||| ||||||||||| ||||||||||  |||||  |||||||    || |||    
T  46474205 agcccttcaccagagaaaggtaaaaccacacctagctcctttagcatatcg-gaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtca 46474107  T
Q  420 cctactttcactcgtttataaggaagctttggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaa 519  Q
    ||||||| ||||   | | ||||||||||  | | ||| || ||| |||||||||||||||||||||||| |   |  || |||||||||||||||||||    
T  46474106 cctacttccactttatcaaaaggaagcttgtgttgtagtaaatcagattcagaagccaccttttcaaccaaacttggaagcccatcttttgcatttggaa 46474007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 47413795 - 47413889
Alignment:
Q  83 aacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaaaaggaaagggtgatcggctagaaagtcta 177  Q
    ||||||||||||||| || |||||  |||||| |||||||| ||| |||||||||||||||||||| | ||||||||| ||||||| ||||||||    
T  47413795 aacaagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtcta 47413889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 411
Target Start/End: Complemental strand, 51944185 - 51944076
Alignment:
Q  302 agagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaat 401  Q
    |||||||||||||||||| ||||||||||  ||||||||||||| ||||||||||| ||| | ||| |||| || ||||||| |||||||||  ||||||    
T  51944185 agagtccaccatttttgtaaaacctccaggtgagaaaggtaaaaccactcctagcttctttagcatacgagtagcttcaagctcaaatgaaatattgaat 51944086  T
Q  402 cttggaattt 411  Q
     | |||||||    
T  51944085 ttcggaattt 51944076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 409
Target Start/End: Original strand, 46548752 - 46548940
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtc 320  Q
    |||||||||| | ||||| || |||||||||||| |||||||||||||||| || |||||| ||| || || | |   | |||||| |||||||||||||    
T  46548752 agcagcttcattaccttcttcttttacttcaatgaaagacttgtgaaatattttagaaacataaaggtatttatcaataggagagttcaccatttttgtc 46548851  T
Q  321 aaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaat 409  Q
    ||||| |||| | ||||||||| |   |||||||| ||||| | ||     |||||||||||| ||||| | | |||||||||||||||    
T  46548852 aaaccaccaggatagaaaggtagatcaactcctagttccttgagcacatttgaagtttcaagctcaaataatattttgaatcttggaat 46548940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 46480323 - 46480222
Alignment:
Q  76 atcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaaaaggaaagggtgatcggctagaaagtc 175  Q
    |||||||| ||||||||||||| ||||||||  ||||||||||||||  |||| | ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  46480323 atcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagtc 46480224  T
Q  176 ta 177  Q
    ||    
T  46480223 ta 46480222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 4581137 - 4581197
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaaca 281  Q
    |||||||||||| ||| | ||||||||||||||  |||||||||||||||| |||||||||    
T  4581137 agcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatatcttggaaaca 4581197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 4613594 - 4613654
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaaca 281  Q
    |||||||||||| ||| | ||||||||||||||  |||||||||||||||| |||||||||    
T  4613594 agcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatatcttggaaaca 4613654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 45883729 - 45883785
Alignment:
Q  466 attcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaagaa 522  Q
    |||||||||||||||| || |||| ||| || |||||||||||||||||||||||||    
T  45883729 attcagaagccaccttctcgaccaaagctgacagtccatcttttgcatttggaagaa 45883785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 46532215 - 46532155
Alignment:
Q  301 gagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctcctt 361  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||  ||||||| ||||||    
T  46532215 gagagtccgccatttttgtcaaacctccaccagagaaaggtaaaacaactcctaactcctt 46532155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 409
Target Start/End: Original strand, 46554013 - 46554121
Alignment:
Q  301 gagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaa 400  Q
    ||||||| || |||||||| |||||||||  ||||||||||||||||||||| | |||||||| |||   ||||  ||||| |||||| |||| || |||    
T  46554013 gagagtctactatttttgttaaacctccattagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaaacccaaaagaaatttcgaa 46554112  T
Q  401 tcttggaat 409  Q
     ||||||||    
T  46554113 acttggaat 46554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 46474457 - 46474366
Alignment:
Q  72 taagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaaaaggaaagggtgatc 163  Q
    |||||||||||| |||||||||| || ||||||||  ||||||||||||||  || | |||| |||||||||||| | | ||| ||||||||    
T  46474457 taagatcacccatcaagaggattaagcacctgtccaacaaagatgattgttccggccaaatcatctctaattagatataagaatgggtgatc 46474366  T

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Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 46532283 - 46532224
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaac 280  Q
    |||||||||||||||||  ||||||||||||||| |||| || ||||||||||| |||||    
T  46532283 agcagcttcagtgcctttttcatttacttcaatgaaagaattttgaaatatgttagaaac 46532224  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 4613703 - 4613776
Alignment:
Q  336 aaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaat 409  Q
    |||||||||| ||||||||||||||||| ||| | ||| ||||||||| |||| ||||  |||| |||||||||    
T  4613703 aaaggtaaaaccactcctagctccttcagcatactagacgtttcaagctcaaaagaaatattgagtcttggaat 4613776  T

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Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 406
Target Start/End: Complemental strand, 46491086 - 46490900
Alignment:
Q  214 tggctgtagcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccat 313  Q
    |||||| | ||||||| |||||||| |||||||| |||||  |||||||||||||||| || |||| | | | || |||||       ||||| ||||||    
T  46491086 tggctgcaacagcttcggtgccttcttcatttacatcaataaaagacttgtgaaatattttagaaatacataggttttgac------tagagttcaccat 46490993  T
Q  314 ttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttgg 406  Q
    ||| || | |||||||   | ||||||||||| ||| || |||||||||| |||   |||||||||||| ||||||||||  ||||| |||||    
T  46490992 tttagtaagacctccattggtgaaaggtaaaaccacgcccagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgg 46490900  T

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Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 323
Target Start/End: Original strand, 47413945 - 47414053
Alignment:
Q  221 agcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgacctt------caagagagtccaccatt 314  Q
    |||||||||||| ||||| ||||| ||||| ||| |||||||||||||||| | ||||||| ||  ||||||| |||       ||||||||||||||||    
T  47413945 agcagcttcagttccttcttcattcacttcgatgaaagacttgtgaaatatctgggaaacaaaatggtcttgatcttgatctggaagagagtccaccatt 47414044  T
Q  315 tttgtcaaa 323  Q
    || ||||||    
T  47414045 ttagtcaaa 47414053  T

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Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 51944424 - 51944319
Alignment:
Q  72 taagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaaaaggaaagggtgatcggctagaa 171  Q
    |||||||||||   ||| || ||||| ||||||||  ||||||||||||||   ||| ||||||||||||| ||||| | ||||||||| || |||| ||    
T  51944424 taagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctacaa 51944325  T
Q  172 agtcta 177  Q
    ||||||    
T  51944324 agtcta 51944319  T

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Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 5156779 - 5156671
Alignment:
Q  72 taagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaaaaggaaagggtgatcggctagaa 171  Q
    ||||||||| || |||| |||||||| || |||||  ||||||  || |||   ||||| | ||||||||||||||| | |||||||||||| |||| ||    
T  5156779 taagatcactcatcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctacaa 5156680  T
Q  172 agtctattc 180  Q
    |||||||||    
T  5156679 agtctattc 5156671  T

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Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 522
Target Start/End: Original strand, 47414176 - 47414243
Alignment:
Q  455 taggaactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaagaa 522  Q
    ||| |||||| |||||||||||||||| ||||||| ||| || ||||||||| |||  ||||||||||    
T  47414176 tagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgtgtttggaagaa 47414243  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 51944287 - 51944216
Alignment:
Q  203 tattccagcattggctgtagcagcttcagtgccttcctcatttacttcaatggaagacttgtgaaatatgtt 274  Q
    |||| ||||| ||||||  |||||||||   ||||| ||||||||||||||| |||| ||||||||||||||    
T  51944287 tattgcagcagtggctgcggcagcttcaacaccttcttcatttacttcaatgaaagatttgtgaaatatgtt 51944216  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 4581246 - 4581319
Alignment:
Q  336 aaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaat 409  Q
    |||||||||| ||||||||||||||||| ||  | ||| ||||||||  |||| ||||  ||||||||||||||    
T  4581246 aaaggtaaaaccactcctagctccttcagcacactagacgtttcaagttcaaaagaaatattgaatcttggaat 4581319  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 520
Target Start/End: Complemental strand, 5160412 - 5160351
Alignment:
Q  459 aactcaaattcagaagccaccttttcaaccatagccgatagtccatcttttgcatttggaag 520  Q
    |||||| |||||||||||||||| | ||||| || ||| |  ||||||||||||||||||||    
T  5160412 aactcagattcagaagccaccttcttaaccaaagtcgacaagccatcttttgcatttggaag 5160351  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 45903237 - 45903145
Alignment:
Q  315 tttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttgga 407  Q
    ||||||||||| |||  |  |||||||||| | ||| ||||||| | || ||| ||||||  ||||| ||||||||||||||||||| |||||    
T  45903237 tttgtcaaacccccatgatggaaaggtaaacttacttctagctcttgcaacatacgagaaacttcaaacccaaatgaaaatttgaattttgga 45903145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 46491236 - 46491152
Alignment:
Q  76 atcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaaaaggaaagggtg 160  Q
    |||||||| ||||||||||||  ||||||||  ||||||||||||||   ||| | ||||||||||| | ||| | |||||||||    
T  46491236 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtg 46491152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 256 - 436
Target Start/End: Complemental strand, 20144970 - 20144790
Alignment:
Q  256 aagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctag 355  Q
    ||||||||||||||||||  |||||||||| |  ||||||  ||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||     
T  20144970 aagacttgtgaaatatgtgagaaacagaaaggctttgacccgcaagagagtccaccatttttgtcaaacctccaggaaagaatggtaaaaccactcctaa 20144871  T
Q  356 ctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactttcactcgttt 436  Q
    |||||| |   |   |  ||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||| ||||    
T  20144870 ctcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgttt 20144790  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 256 - 436
Target Start/End: Original strand, 20168804 - 20168984
Alignment:
Q  256 aagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctag 355  Q
    ||||||||||||||||||  |||||| ||| |  ||||||  | | ||| ||||||||||||||||||||||||| | |||| ||||||||||||||||     
T  20168804 aagacttgtgaaatatgtgagaaacaaaaaggctttgacccgcgatagaatccaccatttttgtcaaacctccaggaaagaatggtaaaatcactcctaa 20168903  T
Q  356 ctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactttcactcgttt 436  Q
    | |||| |   |   |  ||||||||||||||||||||  |||||||| |||||||  || ||||||||||||||| ||||    
T  20168904 cccctttagggtatcactagtttcaagcccaaatgaaacattgaatctaggaattttaaagtcacctactttcacttgttt 20168984  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 256 - 436
Target Start/End: Complemental strand, 20359480 - 20359300
Alignment:
Q  256 aagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctag 355  Q
    |||||||||||||||||   |||||| ||| |  ||||||  | | ||| |||||||||||| |||||||||||| | |||| |||||| |||||||||     
T  20359480 aagacttgtgaaatatgcgagaaacaaaaaggctttgacccgcgatagaatccaccatttttttcaaacctccaggaaagaatggtaaagtcactcctaa 20359381  T
Q  356 ctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactttcactcgttt 436  Q
    |||||| |   |   |  ||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||| ||||    
T  20359380 ctcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgttt 20359300  T

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Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 17708636 - 17708516
Alignment:
Q  234 ccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaag 333  Q
    ||||| ||||||||||||||| ||||||| |||||||||  ||||||| |||  ||||||| |  | ||||||||||||||||||||||||||||   ||    
T  17708636 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacctcccatag 17708537  T
Q  334 agaaaggtaaaatcactccta 354  Q
    | ||||||||| ||| |||||    
T  17708536 aaaaaggtaaagtcaatccta 17708516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 16722513 - 16722419
Alignment:
Q  234 ccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctcc 328  Q
    ||||| ||||||||||||||| ||||||| |||||||||  ||||||| |||  ||||||| |  | ||||||||||||||||||||||||||||    
T  16722513 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacctcc 16722419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 17699527 - 17699433
Alignment:
Q  234 ccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctcc 328  Q
    ||||| ||||||||||||||| ||||||| |||||||||  ||||||| |||  ||||||| |  | ||||||||||||||||||||||||||||    
T  17699527 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacctcc 17699433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 17736290 - 17736196
Alignment:
Q  234 ccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctcc 328  Q
    ||||| ||||||| ||||||| ||||||| ||||||||| ||| ||||||||  ||||||| |  | ||||||||||||||||||||||||||||    
T  17736290 ccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcc 17736196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 17718460 - 17718340
Alignment:
Q  234 ccttcctcatttacttcaatggaagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaag 333  Q
    ||||| || |||||||||||| ||||||| |||| ||||| ||||||| | |  ||||||| |  | ||||||||||||||||||||||||||||   ||    
T  17718460 ccttcttcgtttacttcaatgcaagacttctgaagtatgtcggaaacaaatatttcttgacttataggagagtccaccatttttgtcaaacctcccatag 17718361  T
Q  334 agaaaggtaaaatcactccta 354  Q
    | ||||||||| ||| |||||    
T  17718360 aaaaaggtaaagtcaatccta 17718340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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