View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_12 (Length: 531)
Name: NF17265_high_12
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 38584341 - 38584731
Alignment:
| Q |
1 |
gaaattcattggccatgtatataggccttcatcatccatcactttgattacaatttcatccgttcaattatttttagcaggtgtatatgagccggagact |
100 |
Q |
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| T |
38584341 |
gaaattcattggccatgtatataggccttcatcatccatcactttgattacaatttcatccgttcaattatttttagcaggtgtatatgagccggagact |
38584440 |
T |
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| Q |
101 |
tggatgggtttgtttgtgttccactattctaaatctttggtgaccaaatttaaatcaaacaaacactaaatatggaactttatatttacnnnnnnnggta |
200 |
Q |
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| T |
38584441 |
tggatgggtttgtttgtgttccactattctaaatctttggtgaccaaatttaaatcaaacaaacactaaatatggaactttatatttactttttttggta |
38584540 |
T |
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| Q |
201 |
aatgaaattagatttgagaggttg-catattttcattatattcttttacatatgcacgaggctcgaatcaaaccataatcaaatagttaaaagatttaaa |
299 |
Q |
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| T |
38584541 |
aatgaaattagatttgagaggttgacattttttcattatattcttttacatatgcacgaggctcgaatcaaaccataatcaaatagttaaaagatttaaa |
38584640 |
T |
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| Q |
300 |
tatcgacaatttgtatcagatcatgtctgtaaaacacagtatatattaacacaatccaatattaaaacataaagtttttattttcactgat |
390 |
Q |
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| T |
38584641 |
tatcgacaatttgtatcagatcatgtctgtaaaacacagtatatattaacacaatccaatattaaaacataaagtttttattttcactgat |
38584731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 510
Target Start/End: Original strand, 38584792 - 38584855
Alignment:
| Q |
451 |
cattgcaattagtaatgatatatctttaaggat----ttaatttatatacattgacaacataaa |
510 |
Q |
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| T |
38584792 |
cattgcaattagtaatgatatatctttaaggatttaattaatttatatacattgacaacataaa |
38584855 |
T |
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