View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_18 (Length: 483)
Name: NF17265_high_18
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 83 - 471
Target Start/End: Complemental strand, 4759655 - 4759269
Alignment:
| Q |
83 |
atcaagcagcctaacagcgaatttcacgcaccaccaggttcaaactcatgtcacaatatatgaaatgtctctagannnnnnnncttcatgtcttattagt |
182 |
Q |
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| T |
4759655 |
atcaagcagcctaacagcgaatttcacgcacca---ggttcaaactcgtctcacaatatatgaaatgtctctagattttttttcttcatgtcttattagt |
4759559 |
T |
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| Q |
183 |
ttttt-atatgcatcacttctactaaagttacaatgttttttagagtttgatagtcttattatttttgttggaattaaaaaagattaacaagaagcaagc |
281 |
Q |
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| T |
4759558 |
ttttttatatgcatcacttctactaaagctacaatgttttttagagtttgatagtcttattatttttgttggaattaaaaaagattaacaagaagcaagc |
4759459 |
T |
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| Q |
282 |
aattcaatcatgtatgtttatattagtattaacttttgtgaaactgtgtttaattcaagtttgaaaacttgtgttgtgattgattgaatatgttcttaaa |
381 |
Q |
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| T |
4759458 |
aattcaataatgtatgtttatattagtatgaacttttgtgaaactgtgtttaattcaagtttgaaaacttgtgttgtgattgattgaatatgttcttaaa |
4759359 |
T |
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| Q |
382 |
aatgtttaaagagtctaaattgttgggtgtgcttggctaacatgaatggtagagaaagataaaatgaatgattaaaacttttaaaatatt |
471 |
Q |
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| T |
4759358 |
aatgtttaaagagtctaaattgttgggtgtgcttggctaacatgaatggtagagaaagataaaatgaatgattaaaacttttaaaatatt |
4759269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 4759736 - 4759684
Alignment:
| Q |
19 |
gagagcagggttaacggcgttgatttacctagctgatggaacttacatgtaag |
71 |
Q |
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| T |
4759736 |
gagagcagggttgacggcgttgatttacctagctgatggaacttacacgtaag |
4759684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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