View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_20 (Length: 477)
Name: NF17265_high_20
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 29065608 - 29065157
Alignment:
| Q |
17 |
agaatctgatatggaatcaagacaaaggagttaatcaagagtgatgttcaaacacaaatagatgaacccttctatctcaaataagttgcatatttgcact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29065608 |
agaatctgatatggaatcaagacaaaggagttaatcaagagtgatgttcaaacacaaatagatgaacccttctatctcaaataagttgcatatttgcact |
29065509 |
T |
|
| Q |
117 |
taacttagatatcctatagggccatcaaaatcttagcattgttttgtttatggtttgtggtacaaaaagtgtgcctgagaatagaccttagagaaaaact |
216 |
Q |
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| T |
29065508 |
ttacttagatatcctatagggccatcaaaatcttagcattgttttgtttatggtttatggtacaaaaagtgtgcctgagaatagaccttagagaaaaact |
29065409 |
T |
|
| Q |
217 |
tctgagcatgacttcgaatctgaaccgcagtctttgaaccgacatgttctgtgtcgagaaaataaataatctcaaaacttagaccaagcacaatcatact |
316 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29065408 |
tctgagcatgacttcgaatctggatcgcagtctttgaaccgacatgttctgtgtcgagaaaataaataatctcaaaacttagaccaagcacaatcatact |
29065309 |
T |
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| Q |
317 |
cgttcattaattaatttccttgttagctatactttcctaataaatggaaatttcaaaccagtcataccttcaatgcttcgccaggcccggccatacagct |
416 |
Q |
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| T |
29065308 |
cgttcattaattaatttccttgttagctatactttcctaataaatggaaatttcaaaccagtcataccttcaatgcttcgccaggcccggccatacagct |
29065209 |
T |
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| Q |
417 |
tcaaggcttcaaggaacttcttatgttcttcatctgtccatctttctctctg |
468 |
Q |
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| T |
29065208 |
ttaaggcttcaaggaacttcttatgttcttcatctgtccatctttctctctg |
29065157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 32830345 - 32830449
Alignment:
| Q |
196 |
aatagaccttagagaaaaacttctgagcatgacttcgaatctgaaccgcagtctttgaaccgacatgttctgtgtcgagaaaataaataatctcaaaact |
295 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||||||| || |||||||||| || |||||||||||| | ||||||||| ||| |||||| |
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| T |
32830345 |
aataaaccttagaaaaaaacttctgagcatgacttcgaatctgcacagcagtctttgtgccaacatgttctgtg--gtgaaaataaaggatccaaaaact |
32830442 |
T |
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| Q |
296 |
tagacca |
302 |
Q |
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||||||| |
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| T |
32830443 |
tagacca |
32830449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 468
Target Start/End: Original strand, 32830540 - 32830628
Alignment:
| Q |
380 |
ataccttcaatgcttcgccaggcccggccatacagcttcaaggcttcaaggaacttcttatgttcttcatctgtccatctttctctctg |
468 |
Q |
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|||||||| || |||||||||| ||||| || | || || ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32830540 |
ataccttcgatttttcgccaggctcggccgtataattttaaagcttcaaggaacttcttatgttcttcatctgtccacttttctctctg |
32830628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 4434673 - 4434736
Alignment:
| Q |
274 |
gaaaataaataatctcaaaacttagaccaagcacaatcatactcgttcattaattaatttcctt |
337 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||| ||| ||| ||| ||||||| |
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| T |
4434673 |
gaaaataaacaatctcaaaacttagaccaaacacaatcatactccttcgttacttattttcctt |
4434736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 4434815 - 4434860
Alignment:
| Q |
403 |
ccggccatacagcttcaaggcttcaaggaacttcttatgttcttca |
448 |
Q |
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||||||| | ||||| | |||||||||||||||||||||||||||| |
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| T |
4434815 |
ccggccacatagctttagggcttcaaggaacttcttatgttcttca |
4434860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 28640983 - 28640944
Alignment:
| Q |
201 |
accttagagaaaaacttctgagcatgacttcgaatctgaa |
240 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| |
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| T |
28640983 |
accttagagaaaaacttttgagcatggcttcgaatctgaa |
28640944 |
T |
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