View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_21 (Length: 476)
Name: NF17265_high_21
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_21 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold0742 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Complemental strand, 122648 - 122198
Alignment:
| Q |
11 |
ttattctagggtgatagtgattaggggaaatctaggatcactacagtctacatactatatgtatctgaattatgttatcatattcataaattaataaggt |
110 |
Q |
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| T |
122648 |
ttattctagggtgatagtgattaggggaaatctaggatcactacagtctatatactatatgtatctgaattatgttatcatattcataaattaataaggt |
122549 |
T |
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| Q |
111 |
tagcatgtagcatacaaataatttgagttggttttacataatgatcaggtggagtaactccgaaacattcctctagctatccagcaaaaatacctatcaa |
210 |
Q |
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| T |
122548 |
tagcgtgtagcatacaaataatttgagttggttttacataatgattaggtggagtaactccgaaacattcctctagctatccagcaaaaatacctatcaa |
122449 |
T |
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| Q |
211 |
tgaggctagagctggaacttctattactatcatgtggatttcacttttaggaaaatcccatccagcctgaacctggagcctgcaagggacttgacttatt |
310 |
Q |
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| T |
122448 |
tgaggctagagccggaacttctattactatcatgtggatttcacttttaggaaaatcccatccagcctgaacctggagcctgcaagggacttgacttatt |
122349 |
T |
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| Q |
311 |
tgaaataatttatgtaatcttacttaatgatatactagtcatattgcaaaagaatacagccatacaattcagtataaacacaacatcaacactaacacat |
410 |
Q |
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| T |
122348 |
tgaaataatttatgtaatcttacttaatgatatactagtcatattgcaaaagaatacagccatacaattcagtataaacacaacatcaacactaacacat |
122249 |
T |
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| Q |
411 |
aatagggaaactaagcatacaagtgtcagtcaaaatagtcatcaactaact |
461 |
Q |
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| T |
122248 |
aatagggaaactaagcatacaagtgtcagtcaaaatagtcatcaattaact |
122198 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 7451424 - 7451473
Alignment:
| Q |
173 |
aaacattcctctagctatccagcaaaaatacctatcaatgaggctagagc |
222 |
Q |
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| T |
7451424 |
aaacattcctctttctatccggctaaaatacctatcaatcaggctagagc |
7451473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0742 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0742
Description:
Target: scaffold0742; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 1057 - 1021
Alignment:
| Q |
359 |
aaagaatacagccatacaattcagtataaacacaaca |
395 |
Q |
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| T |
1057 |
aaagaatacatccatacaatttagtataaacacaaca |
1021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 24124048 - 24123956
Alignment:
| Q |
263 |
aaatcccatccagcctgaacctggagcctgcaagggacttgacttatttgaaataatttatgtaatcttacttaatgatatactagtcatatt |
355 |
Q |
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| T |
24124048 |
aaatctcatctaacctaaacttggagcctgcaagggacacgacttatctgaaataatatgtgtaatcatgcttaaacatattctaatcatatt |
24123956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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