View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_high_23 (Length: 462)

Name: NF17265_high_23
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_high_23
NF17265_high_23
[»] chr3 (8 HSPs)
chr3 (19-458)||(3220276-3220715)
chr3 (19-458)||(3356171-3356610)
chr3 (37-434)||(3201850-3202247)
chr3 (19-445)||(3309438-3309864)
chr3 (91-458)||(3722426-3722793)
chr3 (19-450)||(3321040-3321468)
chr3 (21-444)||(3302752-3303175)
chr3 (333-443)||(3197487-3197597)


Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 3220276 - 3220715
Alignment:
Q  19 aggttcaggtacgttaggtggaaaaggttccctaagttatcaggaacataattcaaccgagatttctcaaaatcaagtactttcaaaagcttgaacttgg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220276 aggttcaggtacgttaggtggaaaaggttccctaagttatcaggaacataattcaaccgagatttctcaaaatcaagtactttcaaaagcttgaacttgg 3220375  T
Q  119 aaattaatccatccatgaaatgttcatccagttctcctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgg 218  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3220376 aaactaatccatccatgaaatgttcatccagttctcctttgtcgaaaacaaatacagcgcgaattcctgagttaccagtactggtcaacacattgtttgg 3220475  T
Q  219 gttagctgctatagagaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220476 gttagctgctatagagaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatg 3220575  T
Q  319 atcacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220576 atcacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtca 3220675  T
Q  419 tgtactcttccgcaacttcctccaatggtcttctgtgctc 458  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  3220676 tgtactcttccgcaacttcctccaatggtcttgtgtgctc 3220715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 3356171 - 3356610
Alignment:
Q  19 aggttcaggtacgttaggtggaaaaggttccctaagttatcaggaacataattcaaccgagatttctcaaaatcaagtactttcaaaagcttgaacttgg 118  Q
    ||||||| |||| |||||||||||||  |||| ||||||||||||| |||||||||    ||  ||||||| ||||||||| |||||||||||||||||     
T  3356171 aggttcaagtaccttaggtggaaaagactccccaagttatcaggaatataattcaaaactgaactctcaaagtcaagtactctcaaaagcttgaacttga 3356270  T
Q  119 aaattaatccatccatgaaatgttcatccagttctcctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgg 218  Q
     |  |||| ||||||||||||||| |  || ||| ||||| |||||||| |||||||| |||||||| ||||||||||| ||  |||| |||||||| |     
T  3356271 cagataattcatccatgaaatgtttaggcaattcacctttgtcgaaaactaatacagcacgaattcctgagttaccagtgcttctcaatacattgttgga 3356370  T
Q  219 gttagctgctatagagaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatg 318  Q
    | | ||| |||||||||||||||||  | ||||  || ||  |||||||| |||| ||||||   |||| ||||| ||| ||||||||| |||| | |||    
T  3356371 gatggctactatagagaagcgcctagttattccaaccgtgacttgttcatcacctccatgcactgaatgacaaaaacttaaatctttcatttttttaatg 3356470  T
Q  319 atcacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtca 418  Q
    | |||||| |||| ||||||||| || ||||| ||||| |||||||||||||| |||  ||||||||| |||||||||||||| | || ||||| | |||    
T  3356471 accacttcacgcaacaaatcatggacttgacatcttttaactttcccatcaaagccaagtttggaaacctgaaccaaacttctctgtaccaactctatca 3356570  T
Q  419 tgtactcttccgcaacttcctccaatggtcttctgtgctc 458  Q
     ||||||||| ||||||||||| ||||||||| |||||||    
T  3356571 agtactcttcagcaacttcctcgaatggtcttgtgtgctc 3356610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 37 - 434
Target Start/End: Complemental strand, 3202247 - 3201850
Alignment:
Q  37 tggaaaaggttccctaagttatcaggaacataattcaaccgagatttctcaaaatcaagtactttcaaaagcttgaacttggaaattaatccatccatga 136  Q
    |||||||| ||||| ||||||||||||||| |||||||| | || ||||| |||||||| |||||||||||||||||||| | |   |||||||||||||    
T  3202247 tggaaaagattccccaagttatcaggaacaaaattcaacagggagttctcgaaatcaagcactttcaaaagcttgaactttgcagacaatccatccatga 3202148  T
Q  137 aatgttcatccagttctcctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgggttagctgctatagagaa 236  Q
    ||| || |   | |||  |||| ||||||||||| | ||| |||||||| ||||| |  || ||  |||||||||| || |   ||| ||||||||| ||    
T  3202147 aatctttagataattcatctttgtcgaaaacaaaaatagcacgaattcctgagttgcttgtgcttctcaacacatttttggaaatagatgctatagaaaa 3202048  T
Q  237 gcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgatcacttcgcgcatcaaa 336  Q
     ||||||  | ||||  |  ||  |||||||| |||||||||||| ||||||||||||||| |||||| || |||||| | ||||||||| |||| ||||    
T  3202047 acgcctagttattccaactgtgacttgttcatcaccttcatgcattaaatggcaaaagcttaaatcttgcatttttctaaggatcacttcacgcaacaaa 3201948  T
Q  337 tcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgcaac 434  Q
    | ||| || |||||||| || | |||||||||||||||| |||||||||| |||| ||||||||| | |||||||| ||||| ||||||||| |||||    
T  3201947 ttatggacttgacaactcttgattttcccatcaaaaccaactttggaaacatgaatcaaacttctttgtatcaactctgtcaagtactcttcagcaac 3201850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 3309438 - 3309864
Alignment:
Q  19 aggttcaggtacgttaggtggaaaaggttccctaagttatcaggaacataattcaaccgagatttctcaaaatcaagtactttcaaaagcttgaacttgg 118  Q
    ||||||| |||| ||||| ||||||| || || ||||||||||||| ||||||||||  ||| |||| ||||||||||||||||||||||||||||||||    
T  3309438 aggttcaagtaccttaggaggaaaagatttcccaagttatcaggaatataattcaacaaagaattctgaaaatcaagtactttcaaaagcttgaacttgg 3309537  T
Q  119 aaattaatccatccatgaaatgttcatccagttctcctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgg 218  Q
     |  ||||||||| ||||| || | |   | |||  || | || |||||||| | ||| ||||| || ||||| | |||  |   |||  ||||||| ||    
T  3309538 cagataatccatctatgaactgcttaggaaattcatctctgtcaaaaacaaaaatagcacgaatgccagagttgctagtgtttcgcaagtcattgttggg 3309637  T
Q  219 gttagctgctatagagaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatg 318  Q
    | | | ||||||||| | |||||||  | |  |  |||||  |||||||| |  ||  ||||| ||||||||||||||| ||||||||| |||||| |||    
T  3309638 gatggatgctatagaaatgcgcctagttatcacaaccatgtgttgttcatcatatttgtgcattaaatggcaaaagcttaaatctttcatttttctaatg 3309737  T
Q  319 atcacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtca 418  Q
    ||||| | | ||| ||||||||  || ||||||||||| |||||||||||||||||| || ||||||| |||||||||||||| | || ||||| |||||    
T  3309738 atcacctggtgcaacaaatcattgacttgacaacttttgactttcccatcaaaaccaactctggaaacctgaaccaaacttctctgtaccaactctgtca 3309837  T
Q  419 tgtactcttccgcaacttcctccaatg 445  Q
     ||||||||| ||||||||||||||||    
T  3309838 ggtactcttcagcaacttcctccaatg 3309864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 91 - 458
Target Start/End: Complemental strand, 3722793 - 3722426
Alignment:
Q  91 tcaagtactttcaaaagcttgaacttggaaattaatccatccatgaaatgttcatccagttctcctttttcgaaaacaaatacagcgcgaattccggagt 190  Q
    ||||| ||| ||||||||||||||||||||  |||||||||||||||  ||| |   | ||| ||||| |||||||| ||||||||||||||||| ||||    
T  3722793 tcaagaactctcaaaagcttgaacttggaagataatccatccatgaaccgtttaggaaattcacctttgtcgaaaactaatacagcgcgaattcctgagt 3722694  T
Q  191 taccagtactggtcaacacattgtttgggttagctgctatagagaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggca 290  Q
    ||||| | ||   ||||| |||||| | | | ||| ||||||| |||||||||  | ||||  |  ||  | |||||| |||||||||||   |||||||    
T  3722693 taccatttcttcgcaacatattgttggagatggctactatagacaagcgcctagttattccaacagtgactagttcatcaccttcatgcactgaatggca 3722594  T
Q  291 aaagcttgaatctttcacttttctgatgatcacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttga 390  Q
    ||| ||  ||||||||| |||| | || | || ||| | || ||||||||| || ||||| ||||| |||||||||||||| |||  ||||||||| |||    
T  3722593 aaaactaaaatctttcatttttttaataaccatttcacacaacaaatcatggacttgacatcttttaactttcccatcaaagccaagtttggaaacctga 3722494  T
Q  391 accaaacttctatttatcaactttgtcatgtactcttccgcaacttcctccaatggtcttctgtgctc 458  Q
    ||||||||||| | || ||||| | ||| ||||||||| ||||||||||| ||||||||| |||||||    
T  3722493 accaaacttctctgtaccaactctatcaagtactcttcagcaacttcctcgaatggtcttgtgtgctc 3722426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 3321040 - 3321468
Alignment:
Q  19 aggttcaggtacgttaggtggaaaaggttccctaagttatcaggaacataattcaaccgagatttctcaaaatcaagtactttcaaaagcttgaacttgg 118  Q
    ||||||| |||| ||||| || |||| || || ||||||||||||| | ||||||||  ||| ||||||||||||||||||||||||||||||||||| |    
T  3321040 aggttcaagtaccttaggaggtaaagatttcccaagttatcaggaatacaattcaacaaagaattctcaaaatcaagtactttcaaaagcttgaacttag 3321139  T
Q  119 aaattaatccatccatgaaatgttcatccagttctcctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgg 218  Q
     |  ||||||||| ||||| |||| |   | ||| ||||| ||||| ||||||| ||| |||||||| ||||| | | |  |  ||||  ||||||| |     
T  3321140 cagataatccatcaatgaactgtttaggaaattcacctttgtcgaagacaaatatagcacgaattcctgagttgctattgtttctcaagtcattgttgga 3321239  T
Q  219 gttagctgctatagagaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatg 318  Q
    | ||||||||||||| ||||| |||  | ||||  |       |||||||   ||| |||||| | ||  || || ||| ||||||||| |||||| | |    
T  3321240 gatagctgctatagaaaagcgtctagttattccaacagcaacctgttcat---ctttatgcattagataacagaaacttaaatctttcatttttctaagg 3321336  T
Q  319 atcacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtca 418  Q
    |||||||| |||| |||||||||||| ||| |  |||| |  ||||||||||| ||  || ||||||| | |||||||||||| | |||||||| |||||    
T  3321337 atcacttcacgcaacaaatcatgaacttgaaattttttgatcttcccatcaaagccgactctggaaacattaaccaaacttctttgtatcaactctgtca 3321436  T
Q  419 tgtactcttccgcaacttcctccaatggtctt 450  Q
     ||||||||| |||||||||||||||||||||    
T  3321437 ggtactcttctgcaacttcctccaatggtctt 3321468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 3302752 - 3303175
Alignment:
Q  21 gttcaggtacgttaggtggaaaaggttccctaagttatcaggaacataattcaaccgagatttctcaaaatcaagtactttcaaaagcttgaacttggaa 120  Q
    ||||| |||| ||||||||||||| || || || |||||||||| | |||||||   ||| |||||||||||||||||||| |||||||| ||||||  |    
T  3302752 gttcaagtaccttaggtggaaaagatttcccaaattatcaggaataaaattcaatgaagacttctcaaaatcaagtacttttaaaagcttaaacttgaca 3302851  T
Q  121 attaatccatccatgaaatgttcatccagttctcctttttcgaaaacaaatacagcgcgaattccggagttaccagtactggtcaacacattgtttgggt 220  Q
      |||| |||||||||| |||| |  || ||| ||||| || || |||||||| || |||||||| ||||| | |||  |  ||||  | ||||| | |     
T  3302852 gataatacatccatgaactgtttaggcaattcacctttgtcaaagacaaatacggcacgaattcctgagttgctagtgtttctcaattcgttgttggaga 3302951  T
Q  221 tagctgctatagagaagcgcctaactgttccgtccatggtttgttcatgaccttcatgcatcaaatggcaaaagcttgaatctttcacttttctgatgat 320  Q
    ||||||||||||| ||||| |||  | ||||  |  ||  |||||||| | |||||||||| ||||| || || |||  |||||||| |||| | |||||    
T  3302952 tagctgctatagaaaagcgtctagttattccaacggtgacttgttcatcatcttcatgcattaaatgacagaaactttgatctttcatttttttaatgat 3303051  T
Q  321 cacttcgcgcatcaaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatg 420  Q
    |||||| |||| || |||||| || |||||||||   |||||||||||||| |||  |   ||| | | |||||||||||| |  || |||| ||||| |    
T  3303052 cacttcacgcaacacatcatggacttgacaacttcggactttcccatcaaagccaagtacagaagcattaaccaaacttctttgaattaactctgtcagg 3303151  T
Q  421 tactcttccgcaacttcctccaat 444  Q
    |||||||| |||||||||||||||    
T  3303152 tactcttcagcaacttcctccaat 3303175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 443
Target Start/End: Original strand, 3197487 - 3197597
Alignment:
Q  333 caaatcatgaacatgacaacttttcactttcccatcaaaaccatctttggaaacttgaaccaaacttctatttatcaactttgtcatgtactcttccgca 432  Q
    ||||||||| ||  |||||||||| ||||| |||||||| ||| |  | |||||||||||||||||| ||| ||||| || | ||| ||||||||| |||    
T  3197487 caaatcatggactcgacaacttttgacttttccatcaaagccaacactagaaacttgaaccaaacttgtatatatcagctctttcaagtactcttcagca 3197586  T
Q  433 acttcctccaa 443  Q
    |||||||||||    
T  3197587 acttcctccaa 3197597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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