View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_high_27 (Length: 417)

Name: NF17265_high_27
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_high_27
NF17265_high_27
[»] chr8 (5 HSPs)
chr8 (8-399)||(43479980-43480371)
chr8 (323-394)||(41943690-41943761)
chr8 (323-397)||(25865446-25865520)
chr8 (324-399)||(38799242-38799317)
chr8 (324-399)||(38822200-38822275)
[»] scaffold0197 (1 HSPs)
scaffold0197 (317-399)||(30752-30834)
[»] chr7 (2 HSPs)
chr7 (317-399)||(21317314-21317396)
chr7 (323-399)||(3930267-3930343)
[»] chr4 (3 HSPs)
chr4 (126-195)||(53290654-53290723)
chr4 (323-399)||(34748501-34748577)
chr4 (323-379)||(24860292-24860348)
[»] chr1 (1 HSPs)
chr1 (324-394)||(7594907-7594977)
[»] chr2 (3 HSPs)
chr2 (322-399)||(13576093-13576170)
chr2 (323-391)||(34571790-34571858)
chr2 (323-367)||(34562990-34563034)
[»] chr5 (2 HSPs)
chr5 (324-397)||(12531239-12531312)
chr5 (324-397)||(12547307-12547380)


Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 399
Target Start/End: Complemental strand, 43480371 - 43479980
Alignment:
Q  8 catccaaaacaaaaactcacacaagtctgaaatgaaatttaataacaatataaatcaattaatcctattggtcagtttcacatgtcacggatcgcgatcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43480371 catccaaaacaaaaactcacacaagtctgaaatgaaatttaataacaatataaatcaattaatcctattggtcagtttcacatgtcacggatcgcgatcc 43480272  T
Q  108 gagtatccttctccacagaaacttattacaaccgtagatagtccctcttatcaacgatcaaaaacttcccaatcttctaatctaaaaagttttcaattcc 207  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43480271 gcgtatccttctccacagaaacttattacaaccgtagatagttcctcttatcaacgatcacaaacttcccaatcttctaatctaaaaagttttcaattcc 43480172  T
Q  208 cgctttttcctcattattctccactctatatattccaacaaacactcccttcccaatcacatctcaattgaattttccttccctcaattttctttatctc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43480171 cgctttttcctcattattctccactctatatattccaacaaacactcccttcccaatcacatctcaattgaattttccttccctcaattttctttatctc 43480072  T
Q  308 aaatttccaaatccaaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 399  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43480071 aaatttccatatccaaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 43479980  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 41943690 - 41943761
Alignment:
Q  323 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaa 394  Q
    |||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  41943690 aatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaa 41943761  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 25865446 - 25865520
Alignment:
Q  323 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagc 397  Q
    |||||||||||| || ||||| ||||||||||||||||| ||||| || |||||||| |||||||| ||||||||    
T  25865446 aatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagc 25865520  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 38799242 - 38799317
Alignment:
Q  324 atggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 399  Q
    ||||| |||||||| ||||| ||||||||||||||||| ||||| |||||  |||| || ||||||||||| ||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccg 38799317  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 38822275 - 38822200
Alignment:
Q  324 atggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 399  Q
    ||||| |||||||| ||||| ||||||||||||||||| ||||| |||||  |||| || ||||||||||| ||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccg 38822200  T

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Target: scaffold0197 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 30752 - 30834
Alignment:
Q  317 aatccaaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 399  Q
    |||| ||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | ||||||||||||||||||||||    
T  30752 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccg 30834  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 21317314 - 21317396
Alignment:
Q  317 aatccaaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 399  Q
    |||| ||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | ||||||||||||||||||||||    
T  21317314 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccg 21317396  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 3930343 - 3930267
Alignment:
Q  323 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 399  Q
    |||||| |||||||||||||| || || ||||||||||| || ||||| ||| ||||||||||||||||||||||||    
T  3930343 aatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccg 3930267  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 53290654 - 53290723
Alignment:
Q  126 aaacttattacaaccgtagatagtccctcttatcaacgatcaaaaacttcccaatcttctaatctaaaaa 195  Q
    |||| |||||||||||||||||| || |||||||||||| || |||||||||||||||||| ||||||||    
T  53290654 aaacgtattacaaccgtagatagcccttcttatcaacgaccacaaacttcccaatcttctattctaaaaa 53290723  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 34748501 - 34748577
Alignment:
Q  323 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 399  Q
    |||||| |||||||| |||||||||||||||||||| || || |||||||||||||| ||||| ||||| |||||||    
T  34748501 aatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccg 34748577  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 24860292 - 24860348
Alignment:
Q  323 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaa 379  Q
    |||||||||||| || ||||| ||||||||||||||||| || ||||| ||||||||    
T  24860292 aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaa 24860348  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 7594977 - 7594907
Alignment:
Q  324 atggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaa 394  Q
    |||||||||||||| |||||||||||||| || |||||||| || ||||||||||| || |||||||||||    
T  7594977 atggctcgtaccaagcaaaccgctcgcaagtctaccggtggtaaggctccaaggaagcagctcgccaccaa 7594907  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 13576093 - 13576170
Alignment:
Q  322 aaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccg 399  Q
    ||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| |||||||    
T  13576093 aaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccg 13576170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 34571858 - 34571790
Alignment:
Q  323 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccac 391  Q
    |||||| ||||| || ||||| ||||||||||||||||||||||| || ||||||||  ||||||||||    
T  34571858 aatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaaggaactcgccac 34571790  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 34563034 - 34562990
Alignment:
Q  323 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaa 367  Q
    |||||| ||||| || ||||| |||||||||||||||||||||||    
T  34563034 aatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaa 34562990  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 12531239 - 12531312
Alignment:
Q  324 atggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagc 397  Q
    |||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||| || || ||||| |||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagc 12531312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 12547380 - 12547307
Alignment:
Q  324 atggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagc 397  Q
    |||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||| || || ||||| |||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagc 12547307  T

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