View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_34 (Length: 392)
Name: NF17265_high_34
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 7465435 - 7465050
Alignment:
| Q |
1 |
tgctcacattcaacactgcacaggcactgcaagaacacatgccaattatttttcagatcatcatcgcaacctacaaaccaaagtcggcaaattacacctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7465435 |
tgctcacattcaacactgcacaggcactgcaagaacacatgccaattatttttcagatcatcatcgcaacctacacaccaaagtcggcaaattacacctc |
7465336 |
T |
|
| Q |
101 |
tagcctactgatttatatggtttgccaagcaattcctcaacaaatgcatatgaaagtacatacattcgaagcgaccaaatacacgaccaatctcctggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7465335 |
tagcctactgatttatatggtttgccaagcaattcctcaacaaatgcatatgaaagtacatacattcgaagcgaccaaatacacgaccaatctcctggaa |
7465236 |
T |
|
| Q |
201 |
ctttaagctcatcccaattcaatagtctctccatacacacgctataagcactcttcactgtataatttccatgcttattacaacgtcaaataatttggtc |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
7465235 |
ctttaagctcatcccaattcaacagtctctccatacacacgctataagcactcttcaccgtataatttccatgcttattaaaacgtcaaataatttagtc |
7465136 |
T |
|
| Q |
301 |
ccttttatagacatttagtagcggaattcatataatatcctctgaatctccgtcataaaaattcctccaccaactgttcatctcac |
386 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
7465135 |
ccttttatagacatctagtagcggaattcatataatatcctctgaatctccgtcataaaaattcctccaccaattgttcatttcac |
7465050 |
T |
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