View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_35 (Length: 391)
Name: NF17265_high_35
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Complemental strand, 45707412 - 45707057
Alignment:
| Q |
10 |
agtgagatgaaaaagtacacaacggtttactgataactggagacaattcgtaacaaatagtcacaaatgcattaattagaaactcacagcgaaatcataa |
109 |
Q |
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| T |
45707412 |
agtgacatgaaaaagtacacaacggtttactgataactggagacaattcgtaacaaatagtcacaaatgcattaattagaaactcacagcgaaatcataa |
45707313 |
T |
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| Q |
110 |
ctaacaacaaaacatttgatttgcctcacttagcaaggacttcagtcttcaggtaattcacatatccatgtattcgagaataaaatttaattgcacagtg |
209 |
Q |
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| T |
45707312 |
ctaacaacaaaacatttgatttgcctcacttagcaaggacttcag-------gtaattcacatatccatgtattcgagaataaaatttaattgcatagtg |
45707220 |
T |
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| Q |
210 |
agggaaaaagtaaagcacacatcaccttaatatcatttctaattttattttaagctcacttagttgtttaatcatttagttcattaattactttcaatgg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45707219 |
agggaaaaagtaaagcacacatcaccttaatatcatttctaattttattttaagctcacttagttgtttaatcatttagttcattaattactttcaatgg |
45707120 |
T |
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| Q |
310 |
gatttgataattagctttgccccggacaaaataggcaattaaactgtccccgctcgtcctgca |
372 |
Q |
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| T |
45707119 |
gatttgataattagctttgccccggacaaaataggcaattaaactgtccctgctcgtcctgca |
45707057 |
T |
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