View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_37 (Length: 372)
Name: NF17265_high_37
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 21684409 - 21684710
Alignment:
| Q |
15 |
aagcaaggactctattgtttaatagaacatgttctttgtgnnnnnnnnnncaagatctttcataatttggggttattgcaatgttcactcagggtacctt |
114 |
Q |
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| T |
21684409 |
aagcaaggactctattgtttaatagaacatgttctttgtgttttttttttcaagatctttcataatttggggttattgtaatgttcactcagggtacctt |
21684508 |
T |
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| Q |
115 |
gtttagtgtaaatcaaattttgtttatagattcatttttatgcactctttcaatgtaaaagaagttgtatacccttgtgcaattatattttgtcatatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21684509 |
gtttagtgtaaatcaaattttgtttatagattcatttttatgcactctttcaatgtaaaagaagttgtatacccttgtgcaattatattttgtcatatca |
21684608 |
T |
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| Q |
215 |
tatgattactttgacaattcatgtgtcatcaaacaacatcatgtgtcaatgtacctttgaatcatgatgtaaaactattatatgctactatagtagttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21684609 |
tatgattactttgacaattcatgtgtcatcaaacaacatcatgtgtcaatgtacctttgaatcatgatgtaaaactattatatgctactatagtagttca |
21684708 |
T |
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| Q |
315 |
ta |
316 |
Q |
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|| |
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| T |
21684709 |
ta |
21684710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Original strand, 21684724 - 21684753
Alignment:
| Q |
325 |
cgattacttctttttatctattttagcacc |
354 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21684724 |
cgattacttctttttatctattttagcacc |
21684753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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