View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17265_high_45 (Length: 319)
Name: NF17265_high_45
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_45 |
 | |
|
| [»] scaffold0206 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
| [»] scaffold0482 (1 HSPs) |
| | |
|
| [»] scaffold0764 (1 HSPs) |
| | |
|
| [»] scaffold0313 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 15491324 - 15491033
Alignment:
| Q |
16 |
gatggggagatatatgtattatgggagagaaaaatctaaaatggatttaattaacgaagaatgtta-gaattaaccttctacatatgttgaagggg-gtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
15491324 |
gatggggagatatatgtattatgggagagaaaaatctaaaatggatttaattaacaaagaatgttaagaattaaccttctacatatgttgaaggggagtt |
15491225 |
T |
|
| Q |
114 |
tacttagtttgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccatcataaaa |
213 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15491224 |
tatttggtttgataagaattaaactctttcatgtgtttagggagagtttaattgcatatccatgaatattcttacatttattattatatccatcataaaa |
15491125 |
T |
|
| Q |
214 |
cttaagatttattcaaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaat |
305 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15491124 |
cttaagatttattcaaaatgtttgtcatcataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaat |
15491033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 41206620 - 41206904
Alignment:
| Q |
14 |
aggatggggagatatatgtattatgggagagaaaaatctaaaatggatttaattaacgaagaatgtta-gaattaaccttctacatatgttgaagggggt |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||| | |||||||||| || |
|
|
| T |
41206620 |
aggatggggagacatatgtattatgggatagaaaaatctaaaatggatttaattaatgaagaatgtaatgaattaaccttttgcatatgttga-----gt |
41206714 |
T |
|
| Q |
113 |
ttacttagtttgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccatcataaa |
212 |
Q |
| |
|
| ||| ||||| ||||||||||||||||| |||||||||||| |||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
41206715 |
taact-agtttaataagaattaaactcttgtatgtgtttaggg-gagtttaattccataaacatgaacattcttacatttgttattgtatccatcataaa |
41206812 |
T |
|
| Q |
213 |
acttaagatttattcaaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | | |||||| ||||||||| |
|
|
| T |
41206813 |
acttaagatttattcaaaaggtttgtcatcatcaaaaagggggagattgttgaagcaaaaatctttttgataaatgttttaatgataacaaa |
41206904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 266
Target Start/End: Complemental strand, 35756950 - 35756806
Alignment:
| Q |
123 |
tgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccatc-ataaaacttaagat |
221 |
Q |
| |
|
||||||||||||||||| | || |||||||||| ||| |||||| |||| |||||||||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
35756950 |
tgataagaattaaactcctgcacgtgtttagggggagcttaatttcatacctatgaacattcttacattttttattatacacatctataaaacttaagac |
35756851 |
T |
|
| Q |
222 |
ttattcaaaaggtttgtcatcataaaaaatggggagattgttgaa |
266 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
35756850 |
ttattcaaaaggtttgtcatcatcaaaaggggggagattgttgaa |
35756806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 10751657 - 10751618
Alignment:
| Q |
233 |
gtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10751657 |
gtttgtcatcataaaaaatggggggattgttgaaacaaaa |
10751618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 1975475 - 1975434
Alignment:
| Q |
231 |
aggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
1975475 |
aggtttgtcatcatcaaaaagggggagattgttgaggcaaaa |
1975434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 1982841 - 1982800
Alignment:
| Q |
231 |
aggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
1982841 |
aggtttgtcatcatcaaaaagggggagattgttgaggcaaaa |
1982800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 35169119 - 35168945
Alignment:
| Q |
97 |
atatgttgaagggg-gtttacttagtttgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttatt |
195 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
35169119 |
atatgttgagggggagtttaattagtttgataagaattaaactcttgcatgtgtttgtggggagtttaattgcatatacatgaacattcttacatttgtt |
35169020 |
T |
|
| Q |
196 |
attatatccatcataaaacttaagatttattcaaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||| || |||||||| |||||||||||| |||| |
|
|
| T |
35169019 |
attatatccatcataaaacttaagatttattcaaaaagtctgtcat--tacaaaatgggaagattgttgaagaaaaa |
35168945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 42 - 305
Target Start/End: Original strand, 2849427 - 2849695
Alignment:
| Q |
42 |
gagaaaaatctaaaatggatttaattaacgaagaatgtta-gaattaaccttctacatatgttgaagggg-gtttacttagtttgataagaattaaactc |
139 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||||||| | |||||||||| | |||||||| | |||| ||||| |||| ||||||||||||||||| |
|
|
| T |
2849427 |
gagaaaaatccaagatggatttaatcaatgaagaatgtaaagaattaacctcttgcatatgtttatggggagtttaattagaatgataagaattaaactc |
2849526 |
T |
|
| Q |
140 |
tttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccat-cataaaacttaagatttattcaaa--aggttt |
236 |
Q |
| |
|
|| || |||||||||| ||| |||||| ||||| |||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
2849527 |
ttgcacgtgtttagggggagcttaatttcatatctatgaacattcttacatttcttattatacacatccataaaacttaagagttattcaaaagaggttt |
2849626 |
T |
|
| Q |
237 |
gtcatcataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaat |
305 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||| |||||| ||||||||| | |||||| |||||||||| |
|
|
| T |
2849627 |
gtcatcatcaaaaagggggagattgtggaaataaaaatctttttgatgaatgttttaatgataacaaat |
2849695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 35882749 - 35882924
Alignment:
| Q |
130 |
aattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccat-cataaaacttaagatttattca |
228 |
Q |
| |
|
|||||||||||| || |||||||||| ||| |||||| ||||| || ||||||||||||||| |||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
35882749 |
aattaaactcttgcacgtgtttagggggagcttaatttcatatcaataaacattcttacatttcttatcatacacatgcataaaacttaagatttattca |
35882848 |
T |
|
| Q |
229 |
aaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaa |
304 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||| | |||||| ||||||||| |
|
|
| T |
35882849 |
aagggtttgtcatcatcaaaaagggggagattgttgaaccaaaaatctttttgatgaatgttttaatgataacaaa |
35882924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 27160702 - 27160661
Alignment:
| Q |
231 |
aggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
27160702 |
aggtttgtcatcatcaaaaagggggagattgttgaggcaaaa |
27160661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 81 - 304
Target Start/End: Complemental strand, 9295243 - 9295018
Alignment:
| Q |
81 |
agaattaaccttctacatatgttgaagggg-gtttacttagtttgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaa |
179 |
Q |
| |
|
||||||||||| | |||||||| | |||| ||||| |||| |||||||||||||||| || || |||||||||| || |||||| ||| | ||||| |
|
|
| T |
9295243 |
agaattaacctcttgcatatgtttagggggagtttaattagaatgataagaattaaacttttgcacgtgtttagggggaacttaatttcatgtctatgaa |
9295144 |
T |
|
| Q |
180 |
cattcttacatttattattatatccatc-ataaaacttaagatttattcaaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaattatt |
278 |
Q |
| |
|
||||||||| ||| |||||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| || |
|
|
| T |
9295143 |
cattcttacgttttttattatacacatccataaaacttaagacttattcaaaaggtttgtcatcatcaaaaagggggagattgttgaaacaaaaatcttt |
9295044 |
T |
|
| Q |
279 |
ttgatgagtattttaacgataacaaa |
304 |
Q |
| |
|
||||| | | |||||| ||||||||| |
|
|
| T |
9295043 |
ttgattaatgttttaatgataacaaa |
9295018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 9307604 - 9307725
Alignment:
| Q |
81 |
agaattaaccttctacatatgttgaagggg-gtttacttagtttgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaa |
179 |
Q |
| |
|
||||||||||| | |||||||| | |||| ||||| |||| ||||||||||||||||||| || |||||||||| ||| |||||| ||||| ||||| |
|
|
| T |
9307604 |
agaattaacctcttgcatatgtttagggggagtttaattagaatgataagaattaaactcttgcacgtgtttagggggagcttaatttcatatctatgaa |
9307703 |
T |
|
| Q |
180 |
cattcttacatttattattata |
201 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
9307704 |
cattcttacattttttgttata |
9307725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 129 - 304
Target Start/End: Complemental strand, 50067002 - 50066826
Alignment:
| Q |
129 |
gaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccatc-ataaaacttaagatttattc |
227 |
Q |
| |
|
||||||||||||| | |||||||||| ||| |||||| ||||| |||||||||||||||||| || ||||| |||| ||||||||||||| |||||| |
|
|
| T |
50067002 |
gaattaaactcttgaacgtgtttagggggagcttaatttcatatctatgaacattcttacattttttgttatacacatctataaaacttaagacttattc |
50066903 |
T |
|
| Q |
228 |
aaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaa |
304 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| ||||||| |||| |||| | |||||| ||||||||| |
|
|
| T |
50066902 |
aaaaggtttgtcatcatcaaaaagggggagattgttgaaacaaaaatcttttttatgaatgttttaatgataacaaa |
50066826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 6406584 - 6406543
Alignment:
| Q |
231 |
aggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
6406584 |
aggtttatcatcttaaaaaatggggagattgttgaggcaaaa |
6406543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 46 - 304
Target Start/End: Original strand, 7586 - 7848
Alignment:
| Q |
46 |
aaaatctaaaatggatttaattaacgaagaatgtta-gaattaaccttctacatatgttgaagggg-gtttacttagtttgataagaattaaactctttc |
143 |
Q |
| |
|
|||||| ||||| |||||||| || ||| ||||| | |||||||||| | |||||||| | |||| ||||| |||| ||||||||||||||||||| | |
|
|
| T |
7586 |
aaaatccaaaattgatttaatcaatgaacaatgtaaagaattaacctcttgcatatgtttagggggagtttaattagaatgataagaattaaactcttgc |
7685 |
T |
|
| Q |
144 |
atgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccat-cataaaacttaagatttattcaaaa-ggtttgtcat |
241 |
Q |
| |
|
| |||||||||| ||| |||||| ||||| |||||||||||||||| | |||||||| ||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
7686 |
acgtgtttagggggagcttaatttcatatctatgaacattcttacatatcttattatacacatccataaaacttacaatttattcaaaagggtttgtcat |
7785 |
T |
|
| Q |
242 |
cataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaa |
304 |
Q |
| |
|
||| |||| ||||||||||||||| ||||||| || ||| || | |||||| ||||||||| |
|
|
| T |
7786 |
catcaaaaggggggagattgttgaaccaaaaatctttctgacgattgttttaatgataacaaa |
7848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 46 - 304
Target Start/End: Original strand, 20035656 - 20035918
Alignment:
| Q |
46 |
aaaatctaaaatggatttaattaacgaagaatgtta-gaattaaccttctacatatgttgaagggg-gtttacttagtttgataagaattaaactctttc |
143 |
Q |
| |
|
|||||| ||||| |||||||| || ||| ||||| | |||||||||| | |||||||| | |||| ||||| |||| ||||||||||||||||||| | |
|
|
| T |
20035656 |
aaaatccaaaattgatttaatcaatgaacaatgtaaagaattaacctcttgcatatgtttagggggagtttaattagaatgataagaattaaactcttgc |
20035755 |
T |
|
| Q |
144 |
atgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccat-cataaaacttaagatttattcaaaa-ggtttgtcat |
241 |
Q |
| |
|
| |||||||||| ||| |||||| ||||| |||||||||||||||| | |||||||| ||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
20035756 |
acgtgtttagggggagcttaatttcatatctatgaacattcttacatatcttattatacacatccataaaacttacaatttattcaaaagggtttgtcat |
20035855 |
T |
|
| Q |
242 |
cataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaa |
304 |
Q |
| |
|
||| |||| ||||||||||||||| ||||||| || ||| || | |||||| ||||||||| |
|
|
| T |
20035856 |
catcaaaaggggggagattgttgaaccaaaaatctttctgacgattgttttaatgataacaaa |
20035918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 303
Target Start/End: Original strand, 7835815 - 7835995
Alignment:
| Q |
123 |
tgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccatca-taaaacttaagat |
221 |
Q |
| |
|
||||||||||||||||||| || ||||||| || ||| |||||| ||||| |||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
7835815 |
tgataagaattaaactcttgcacgtgtttaagg-gagcttaatttcatatctatgaacattcttacattttttattatacacatctgtaaaacttaagac |
7835913 |
T |
|
| Q |
222 |
ttattcaaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaa |
303 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||||||| ||||||| |||| |||| | ||||| |||||||| |
|
|
| T |
7835914 |
ttattcaaaaggtttttcatcataaaaaagggaaagattgttgaaacaaaaatcttttttatgaatgatttaatgataacaa |
7835995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 152 - 304
Target Start/End: Original strand, 996495 - 996648
Alignment:
| Q |
152 |
agggagagtttaattgcatattcatgaacattcttacatttattattatatccatc-ataaaacttaagatttattcaaaaggtttgtcatcataaaaaa |
250 |
Q |
| |
|
|||| ||| |||||| ||||| |||||||||||||||||| || ||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
996495 |
agggggagcttaatttcatatctatgaacattcttacattttttgttatacatatctataaaacttaagacttattcaaaaggtttgtcatcatcaaaaa |
996594 |
T |
|
| Q |
251 |
tggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaa |
304 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||| | |||||| ||||||||| |
|
|
| T |
996595 |
aggggagattgttgaaacaaaaatcttttttatgaatgttttaatgataacaaa |
996648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 7806392 - 7806543
Alignment:
| Q |
123 |
tgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccatca-taaaacttaagat |
221 |
Q |
| |
|
||||||||||| ||||||| || ||||||| || ||| |||||| ||||| |||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
7806392 |
tgataagaattcaactcttgcacgtgtttaagg-gagcttaatttcatatctatgaacattcttacattttttattatacacatctgtaaaacttaagac |
7806490 |
T |
|
| Q |
222 |
ttattcaaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
7806491 |
ttattcaaaaggtttgtcatcataaaaaagggaaggattgttgaaacaaaaat |
7806543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 18803808 - 18803747
Alignment:
| Q |
123 |
tgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattc |
184 |
Q |
| |
|
||||||||||||||||||| || ||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
18803808 |
tgataagaattaaactcttgcacatgtttagggggagtttaatttcatatatatgaacattc |
18803747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 2848 - 2945
Alignment:
| Q |
207 |
cataaaacttaagatttattcaaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaattattttgatgagtattttaacgataacaaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| | |||||| ||||||||| |
|
|
| T |
2848 |
cataaaacttaagatttattcaaaaggtttgtcatcataaaaaagatggagattgttgaaccaaaaatcattttgatgaatgttttaatgataacaaa |
2945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 12297 - 12146
Alignment:
| Q |
123 |
tgataagaattaaactctttcatgtgtttagggagagtttaattgcatattcatgaacattcttacatttattattatatccatca-taaaacttaagat |
221 |
Q |
| |
|
||||||||||| ||||||| || ||||||| || ||| |||||| ||||| |||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
12297 |
tgataagaattcaactcttgcacgtgtttaagg-gagcttaatttcatatctatgaacattcttacattttttattatacacatctgtaaaacttaagac |
12199 |
T |
|
| Q |
222 |
ttattcaaaaggtttgtcatcataaaaaatggggagattgttgaagcaaaaat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
12198 |
ttattcaaaaggtttgtcatcataaaaaagggaaggattgttgaaacaaaaat |
12146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 284
Target Start/End: Complemental strand, 25902568 - 25902350
Alignment:
| Q |
71 |
gaagaatgtta-gaattaaccttctacatatgttgaagggg-gtttacttagtttgataagaattaaactctttcatgtgt-ttagggagagtttaattg |
167 |
Q |
| |
|
||||||||||| |||||||||| | |||||||| | ||| ||||| |||| ||||| |||||||||| || || |||| |||||| ||| ||||||| |
|
|
| T |
25902568 |
gaagaatgttaagaattaacctattgcatatgtttaggggaagtttaattagaatgatatgaattaaacttttgcacgtgtgttagggggagcttaattg |
25902469 |
T |
|
| Q |
168 |
catattcatgaacattcttacatttatt-attatatccatc-ataaaacttaagatttattcaaaaggtttgtcatcataaaaaatggggagattgttga |
265 |
Q |
| |
|
|||| | ||||||| |||||||| || | ||||| ||| ||||| ||||||||| |||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
25902468 |
catacataagaacatttttacatttttttactatatttatccataaatcttaagattgattcaaaaagtttgtcatcataaaaaaatgagagattgttga |
25902369 |
T |
|
| Q |
266 |
agcaaaaattattttgatg |
284 |
Q |
| |
|
| ||||||| ||||||||| |
|
|
| T |
25902368 |
aacaaaaatcattttgatg |
25902350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 1570 - 1529
Alignment:
| Q |
231 |
aggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
1570 |
aggtttgtcatcatcaaaaagggggagattgttgaggcaaaa |
1529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 5039 - 5080
Alignment:
| Q |
231 |
aggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
5039 |
aggtttgtcatcatcaaaaagggggagattgttgaggcaaaa |
5080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 19196 - 19237
Alignment:
| Q |
231 |
aggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
19196 |
aggtttgtcatcatcaaaaagggggagattgttgaggcaaaa |
19237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 20957480 - 20957521
Alignment:
| Q |
231 |
aggtttgtcatcataaaaaatggggagattgttgaagcaaaa |
272 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
20957480 |
aggtttgtcatcatcaaaaagggggagattgttgaggcaaaa |
20957521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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