View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17265_high_47 (Length: 316)
Name: NF17265_high_47
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 44828222 - 44828520
Alignment:
| Q |
1 |
aataaagacacacaatataatcattatcttattatagacaacaatattgtggtgnnnnnnnnggcaaaatattgatannnnnnncttgtatttaccatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
44828222 |
aataaagacacacaatataatcattatcttattatagacaacaatattgtggtgaaaaaaaaggcaaaatattgatatttttttcttgtatttaccatgc |
44828321 |
T |
|
| Q |
101 |
aacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44828322 |
aacgacgacagtaaaagttgtcaaaagtatctaaagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatc |
44828421 |
T |
|
| Q |
201 |
attttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgtccatgacataaaattagctgctcgtacgcaattaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
44828422 |
attttggtccttttccttgatatttttatatcgctcctgcatattttgattgagaacatttgtccatgacataaaattagctgctcatacgtaattaat |
44828520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 8370640 - 8370763
Alignment:
| Q |
140 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
239 |
Q |
| |
|
|||| ||||||||||||||| || | ||||| |||| | || |||||| | ||||||| || ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
8370640 |
cacttaagcttttgttcaaatatatctcagtttgaggtccattttctccaaaatcttcagaatgttggtccttttccttgatattttgataatgctcctg |
8370739 |
T |
|
| Q |
240 |
catattttgattgagaacatttgt |
263 |
Q |
| |
|
|||||||||||||| || |||||| |
|
|
| T |
8370740 |
catattttgattgaaaatatttgt |
8370763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 8372042 - 8372165
Alignment:
| Q |
140 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
239 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||| || |||||| | ||||||| || ||| || |||||| | |||||| ||| |||||||| |
|
|
| T |
8372042 |
cactcaagcttttgttcaaacatatctcagtttgagatccattttctccaaaatcttcagaatgttgatctttttccctaatatttcgataacgctcctg |
8372141 |
T |
|
| Q |
240 |
catattttgattgagaacatttgt |
263 |
Q |
| |
|
|||||||||||||| || |||||| |
|
|
| T |
8372142 |
catattttgattgaaaatatttgt |
8372165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University