View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_54 (Length: 268)
Name: NF17265_high_54
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_54 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 6471320 - 6471581
Alignment:
| Q |
14 |
aatattatacttaacatgattatctatcgagaagtcaagttctacaatgaactgcattgatcaatacttaaaaatccattgaaatttcaaatataataat |
113 |
Q |
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| T |
6471320 |
aatattatacttaacacgattatctatcgagaagtcaagttctacaatgaactacattgatcaatacttaaaaatcgactgaaatttcaacgataataat |
6471419 |
T |
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| Q |
114 |
tggttctccaaagtagaagttcacaaacctccttattgtaacatctaagataatgatttgatcgatatcaggc----nnnnnnnntac--atatatgtac |
207 |
Q |
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| T |
6471420 |
tggttctccaaagtagaagttcacaaacctccttgttataacatctaagatagttatttgatcgatatcaggcaaaaaaaaaatatacatatatatgtac |
6471519 |
T |
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| Q |
208 |
gtgcctcaaaactcaaatcatatttg-ttttttcttgtttatattaatctaacatcgatcat |
268 |
Q |
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| T |
6471520 |
gtgcctcaaaactcaaatcatatttgtttttttcttgtttatattaatctaacattgatcat |
6471581 |
T |
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