View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17265_high_55 (Length: 266)
Name: NF17265_high_55
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_55 |
 | |
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| [»] chr8 (4 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 45349721 - 45349959
Alignment:
| Q |
18 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnnn |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| || ||||||||||||||| |||| |
|
|
| T |
45349721 |
gtaacactctcgaattcttcttcggtttcgcatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagatccgtgcttttttt |
45349820 |
T |
|
| Q |
118 |
nnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaa |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45349821 |
t----------ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaa |
45349910 |
T |
|
| Q |
218 |
ttcttcttgttctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45349911 |
ttcttcttgttctgtttggcatttgtgatttataatttcttttaaattc |
45349959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 28245251 - 28245388
Alignment:
| Q |
129 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
228 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
28245251 |
ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
28245350 |
T |
|
| Q |
229 |
ctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28245351 |
ctgtttggcatttgtgatttataatttctttgaaattc |
28245388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 28245135 - 28245221
Alignment:
| Q |
18 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| || |||||||||||||| |
|
|
| T |
28245135 |
gtaaaactctcgaattcttcttcggtttcccatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagat |
28245221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 17630147 - 17630239
Alignment:
| Q |
18 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgc |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||| | |||||||||| |||| |||| |
|
|
| T |
17630147 |
gtaacactctcgaattcttcttctttttcgcatttttcgtgctttcggttttgatttcgcttagatttcaccgcaattatctttgatccgtgc |
17630239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 11947212 - 11947453
Alignment:
| Q |
18 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| | |||| || |||||||||||||| |||| |
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|
| T |
11947212 |
gtaacactctcgaattcttcttcggtttggcatttttcgcgcattcggttttgatttcgct-agatttcatcgcaattatcttagattcgtgcttttttt |
11947310 |
T |
|
| Q |
118 |
nnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaa |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11947311 |
ttttc------ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaa |
11947404 |
T |
|
| Q |
218 |
ttcttcttgttctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11947405 |
ttcttcttgttctgtttggcatttgtgatttataatttctttgaaattc |
11947453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 14667128 - 14667367
Alignment:
| Q |
18 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||| |||| || ||||||||||||||| |||| |
|
|
| T |
14667128 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgctttcggtattgattttgcttagatttcatcgcaattatcttagatccgtgcttttttt |
14667227 |
T |
|
| Q |
118 |
nnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaa |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
14667228 |
tt---------ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattctacgtgtttaattttcgtttcacaatttaactcaaa |
14667318 |
T |
|
| Q |
218 |
ttcttcttgttctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14667319 |
ttcttcttattctgtttggcatttgtgatttataatttctttgaaattc |
14667367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 17716073 - 17716313
Alignment:
| Q |
18 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| | || || ||||||||||||||||| |||| || ||||||||||||||| |||| |
|
|
| T |
17716073 |
gtaacactctcgaattcttcttcgatttcacattttttgcgctttcggttttgatttcgcttagatttcatcgcaattatcttagatccgtgcttttatt |
17716172 |
T |
|
| Q |
118 |
nnnnnnnnnnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaa |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17716173 |
ttt--------ctgttatgaatcatctatttcgttcacattgtttgatttttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaa |
17716264 |
T |
|
| Q |
218 |
ttcttcttgttctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17716265 |
ttcttcttgttctgtttggcatttgtgatttataatttctttgaaattc |
17716313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 1658263 - 1658126
Alignment:
| Q |
129 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
228 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1658263 |
ctgttatgagtcatctatttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
1658164 |
T |
|
| Q |
229 |
ctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1658163 |
ctgtttggcatttgtgatttataatttctttgaaattc |
1658126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 13851872 - 13851786
Alignment:
| Q |
18 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
13851872 |
gtaacactctcgaattcttcttcggtttcacatttttcgcgcattcagttttgatttcgcttagatttcatcacaattatcttagat |
13851786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 1658372 - 1658290
Alignment:
| Q |
26 |
ctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||| || ||||||||||||||| |||| |
|
|
| T |
1658372 |
ctcgaattcttcttcggtttcgcatttttcgcgcattt--ttttgatttcgcttagatttcatcgcaattatcttagatccgtgc |
1658290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 13851758 - 13851722
Alignment:
| Q |
129 |
ctgttatgaatcatctatttcattcacattgtttgaa |
165 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
13851758 |
ctgttatgaatcatctatttcgttcacattgtctgaa |
13851722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 23758815 - 23758952
Alignment:
| Q |
129 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
228 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23758815 |
ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
23758914 |
T |
|
| Q |
229 |
ctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
23758915 |
ctgttcggcatttgtgatttataatttatttgaaattc |
23758952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 23824275 - 23824412
Alignment:
| Q |
129 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
228 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23824275 |
ctgttatgaatcatctatttcgttcacattgtttgaattttgttttgatattctatgtgtttaattttcgtttcacaatttaactcaaattcttcttgtt |
23824374 |
T |
|
| Q |
229 |
ctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
23824375 |
ctgttcggcatttgtgatttataatttatttgaaattc |
23824412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 131 - 266
Target Start/End: Complemental strand, 24046651 - 24046516
Alignment:
| Q |
131 |
gttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgttct |
230 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24046651 |
gttatgaatcatctatttcgttcacattgtttgatttttgttttgaaatgttatgtgtttaattttcgtttcacaatttaactcaaattcttcttgttct |
24046552 |
T |
|
| Q |
231 |
gtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24046551 |
gtttggcatttgtgatttataatttctttgaaattc |
24046516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 23758226 - 23758363
Alignment:
| Q |
129 |
ctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgtt |
228 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23758226 |
ctgttatgaatcatctatttcgttcacattgtttaattttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgtt |
23758325 |
T |
|
| Q |
229 |
ctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
23758326 |
ctgtttggcatttgtgatttataatttatttgaaattc |
23758363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 23823682 - 23823820
Alignment:
| Q |
129 |
ctgttatgaatcatctatttcattcacattgtttgaattttgtttt-gaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttcttgt |
227 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||| |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23823682 |
ctgttatgaatcatctatttcgttcacattgtttaatttttttttttgaaattctatgtgtttaatttttgtttcacaatttaactcaaattcttcttgt |
23823781 |
T |
|
| Q |
228 |
tctgtttggcatttgtgatttataatttctttaaaattc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
23823782 |
tctgtttggcatttgtgatttataatttatttgaaattc |
23823820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 24046757 - 24046671
Alignment:
| Q |
18 |
gtaacactctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagat |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| || || | |||| |||||||||| |||| || |||||||||||||| |
|
|
| T |
24046757 |
gtaacactctcgaattctttttcggtttcgcatttttcacgccttcgttttttatttcgcttagatttcatcgcaattatcttagat |
24046671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 9238503 - 9238704
Alignment:
| Q |
26 |
ctcgaattcttcttcggtttcgcatttttcgtgcatttggttttgatttcgcttaaattttataacaattatcttagatcagtgcnnnnnnnnnnnnnnn |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| || |||||||||||||| |||| |
|
|
| T |
9238503 |
ctcgaattcttcttcggtttcgcatttttcgcgcattcggttttgatttcgcttagatttcatcgcaattatcttagattcgtgcttttttttttc---- |
9238598 |
T |
|
| Q |
126 |
nnnctgttatgaatcatctatttcattcacattgtttgaattttgttttgaaattctatgtgtttgattttcgtttcacaatttaactcaaattcttctt |
225 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9238599 |
---ctgttatgaatcatct-tttcgttcacattgtttgaattttgttttgaaattctatgtgtttaattttcgtttcacaatttaactcaaattcttctt |
9238694 |
T |
|
| Q |
226 |
gttctgtttg |
235 |
Q |
| |
|
|||||||||| |
|
|
| T |
9238695 |
gttctgtttg |
9238704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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