View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_60 (Length: 250)
Name: NF17265_high_60
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 27832813 - 27832624
Alignment:
| Q |
13 |
aatattcatacatcacaggcaaataattaataatgatatgataaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagaca |
112 |
Q |
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| T |
27832813 |
aatattcatacatcacaggcaaataattaataatgatatgataaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagaca |
27832714 |
T |
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| Q |
113 |
tgcggaccttaagaaattcaattttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattc |
202 |
Q |
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| T |
27832713 |
tgcggaccttaagaaattcaattttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattc |
27832624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 27827839 - 27827691
Alignment:
| Q |
55 |
aaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgc |
154 |
Q |
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| T |
27827839 |
aaaaatgtaggtcgttaccaggccctaaaatcaaatcaaagatcatagagggcagacatgcggacct---aaaatttaattttcgtgcacacagcaatga |
27827743 |
T |
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| Q |
155 |
ttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgttta |
207 |
Q |
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| T |
27827742 |
ttccttcatt-cttaattccagaccatcggcttattgtgcacgaatttgttta |
27827691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 27845306 - 27845227
Alignment:
| Q |
133 |
attttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgtttataattc |
213 |
Q |
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| T |
27845306 |
attttcgtgcacacaacaatgcttccttcattgtttt-attcagagcatcgacttattgtgcacatattcatttataattc |
27845227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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