View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_high_63 (Length: 246)

Name: NF17265_high_63
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_high_63
NF17265_high_63
[»] chr5 (3 HSPs)
chr5 (102-238)||(31536902-31537038)
chr5 (18-98)||(33566692-33566771)
chr5 (18-69)||(25598141-25598191)
[»] chr6 (3 HSPs)
chr6 (18-98)||(34245059-34245138)
chr6 (25-98)||(13213937-13214009)
chr6 (59-99)||(30579803-30579843)
[»] chr4 (5 HSPs)
chr4 (18-98)||(15041561-15041640)
chr4 (18-98)||(15112784-15112863)
chr4 (18-98)||(15039832-15039911)
chr4 (18-98)||(15114513-15114592)
chr4 (25-100)||(16003623-16003697)
[»] scaffold0590 (1 HSPs)
scaffold0590 (18-91)||(57-129)
[»] scaffold0275 (1 HSPs)
scaffold0275 (18-91)||(3846-3918)
[»] chr7 (3 HSPs)
chr7 (18-98)||(10868102-10868181)
chr7 (18-98)||(10866384-10866463)
chr7 (18-98)||(20186223-20186302)
[»] chr3 (2 HSPs)
chr3 (18-98)||(8584511-8584590)
chr3 (25-94)||(19844661-19844729)
[»] chr8 (2 HSPs)
chr8 (27-99)||(22692524-22692593)
chr8 (28-96)||(30187685-30187752)
[»] chr1 (1 HSPs)
chr1 (25-92)||(17309720-17309786)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 31536902 - 31537038
Alignment:
Q  102 aaatgagaactgggacactattaacaattaaattgacaatgataataattttacaagtatttttctgaaggaatttcaactcaatccttgtaaattaatt 201  Q
    |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||    
T  31536902 aaatgagaactgagacactattcacaaataaattgacaatgataataattttacaactattattctgaaggaatttcaactcaatccttgtaagttaatt 31537001  T
Q  202 ataagatcaaactcgtaccactaattacccctttgct 238  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31537002 ataagatcaaactcgtaccactaattacccgtttgct 31537038  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 33566771 - 33566692
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| ||| ||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  33566771 ttttccctatatttcttcttatcaatcatac-ttctcctatgaagctaatctacatctctttgatccttttatttctgata 33566692  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 25598191 - 25598141
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatct 69  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||| ||||    
T  25598191 ttttccctatgtttctacctatcaatcatac-ttctcctatgaagttcatct 25598141  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34245059 - 34245138
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  34245059 ttttccctatgtttcttcctatcaatcatac-ttctcctataaagctaatctacatctattcgatcctattatttctgata 34245138  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 13214009 - 13213937
Alignment:
Q  25 tatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||  |||| |||||||||||||||| |||||    
T  13214009 tatgtttcttcctatcaatcatac-ttctcctatgaagctaatctcaatctctttgatcctattatttgtgata 13213937  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 30579843 - 30579803
Alignment:
Q  59 gaagttaatctacatctatttgatcctattatttctgataa 99  Q
    |||| ||||||||||||||| ||||||||||||| ||||||    
T  30579843 gaagctaatctacatctattcgatcctattatttatgataa 30579803  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 15041640 - 15041561
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| ||||||  |||| ||||||||||||||||||||||    
T  15041640 ttttccctatgtttcttcctatcaatcatac-ttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15041561  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 15112784 - 15112863
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| ||||||  |||| ||||||||||||||||||||||    
T  15112784 ttttccctatgtttcttcctatcaatcatac-ttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15112863  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 15039911 - 15039832
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||| ||||||  |||| ||||||||||||||||||||||    
T  15039911 ttttccctatatttcttcctatcaatcatac-ttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15039832  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 15114513 - 15114592
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||| ||||||  |||| ||||||||||||||||||||||    
T  15114513 ttttccctatatttcttcctatcaatcatac-ttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15114592  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 16003623 - 16003697
Alignment:
Q  25 tatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgataag 100  Q
    ||||||||||||||||||| |||| || |||||||||||||||||  |||| ||||||||||||||||||||||||    
T  16003623 tatgtttcttcctatcaattatacttt-tcctatgaagttaatctcaatctctttgatcctattatttctgataag 16003697  T

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Target: scaffold0590 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 57 - 129
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatt 91  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  57 ttttccctatgtttcttactatcaatcatac-ttctcctatgaagctaatctacatctattcgatcctattatt 129  T

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Target: scaffold0275 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 3918 - 3846
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatt 91  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||    
T  3918 ttttccctatgtttcttactatcaatcatac-ttctcctatgaagctaatctacatctattcgatcctattatt 3846  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 10868102 - 10868181
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| |||||||||||||||||||||||| ||||| | ||||||||||||  |||| ||||||||||||||||||||||    
T  10868102 ttttccctatgtttcttcctatcaatcatac-ttctcttctgaagttaatctcaatctctttgatcctattatttctgata 10868181  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 10866384 - 10866463
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| ||||||||||| |||||||||||| ||||  ||||||||||||||  |||| ||||||||||||||||||||||    
T  10866384 ttttccctatgtttcttcatatcaatcatac-ttcttttatgaagttaatctcaatctctttgatcctattatttctgata 10866463  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 20186223 - 20186302
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| |||||||||||||||||||||||| ||||||||||| | ||||||  |||| || |||||||||||||||||||    
T  20186223 ttttccctatgtttcttcctatcaatcatac-ttctcctatgaggctaatctcaatcttttcgatcctattatttctgata 20186302  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 8584511 - 8584590
Alignment:
Q  18 ttttccttatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgata 98  Q
    |||||| |||||||||||||||||||||||| || || ||||||| ||||||  ||||||| ||| |||||||||||||||    
T  8584511 ttttccctatgtttcttcctatcaatcatac-ttatcttatgaagctaatctcaatctattcgatactattatttctgata 8584590  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 19844729 - 19844661
Alignment:
Q  25 tatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttct 94  Q
    ||||||||||||||||| |||||| |||| |||||||  ||||||  ||||||| |||||||||||||||    
T  19844729 tatgtttcttcctatcactcatac-ttctgctatgaaactaatctcaatctattcgatcctattatttct 19844661  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 22692524 - 22692593
Alignment:
Q  27 tgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctgataa 99  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||  ||||||| ||||  ||||||||||||||    
T  22692524 tgtttcttcctatcaatcatac-ttctcctataaagctaatctcaatctattcgatc--attatttctgataa 22692593  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 30187752 - 30187685
Alignment:
Q  28 gtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattatttctga 96  Q
    ||||||||||||||||||||| ||||| || |||| ||||||  | ||| | |||||||||||||||||    
T  30187752 gtttcttcctatcaatcatac-ttctcttacgaagctaatctcaacctaatcgatcctattatttctga 30187685  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 17309786 - 17309720
Alignment:
Q  25 tatgtttcttcctatcaatcatacgttctcctatgaagttaatctacatctatttgatcctattattt 92  Q
    ||||||||||| ||| |||||||| ||||||||||||| |||||| ||| | || |||||||||||||    
T  17309786 tatgtttcttcttatgaatcatac-ttctcctatgaagctaatcttcatttcttcgatcctattattt 17309720  T

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