View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_69 (Length: 242)
Name: NF17265_high_69
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_69 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 18537828 - 18537701
Alignment:
| Q |
115 |
taaatgttatcaataaccaaggttgtcaacctctcgagttatcatttaaatgtttattattaatttacaattttaggttactaaacaggtcaatatatat |
214 |
Q |
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| T |
18537828 |
taaatgttatcaataaccaaggttgtcaacctctcgagttatcatttaaatgcttattattaatttacaattttaggttactaaacaggttaatatatat |
18537729 |
T |
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| Q |
215 |
aagttctctttttgataaattcctatga |
242 |
Q |
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| T |
18537728 |
aaattctctttttgataaattcctatga |
18537701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 18538262 - 18538133
Alignment:
| Q |
1 |
tcaaatgaggtaagaatgttttttacacaatgacaactaataagtggttag-------atgtttgataaattctttaatcttaaaaatagtcataggcta |
93 |
Q |
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| T |
18538262 |
tcaaatgaggtaagaatgttatttacacaatgacaactaataagtggttaggattaggatgtttgataatttctttaatcttaaaaatagttagaggcta |
18538163 |
T |
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| Q |
94 |
tagcaatatgtagaaacataataaatgtta |
123 |
Q |
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| T |
18538162 |
tagcaatatgtagaaacataataaatgtta |
18538133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 19425353 - 19425299
Alignment:
| Q |
107 |
aaacataataaatgttatcaataaccaaggttgtcaacctctcgagttatcattt |
161 |
Q |
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| T |
19425353 |
aaacataatagttgtcatcaataaccaaggttgtcaaccactcgaattaacattt |
19425299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 18537691 - 18537658
Alignment:
| Q |
209 |
atatataagttctctttttgataaattcctatga |
242 |
Q |
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| T |
18537691 |
atatataaattctctttttgataaattcctatga |
18537658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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