View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_73 (Length: 235)
Name: NF17265_high_73
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_73 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 6145906 - 6145693
Alignment:
| Q |
8 |
tttgaaccaaagagaacctaaaagaaagtgtggtcaaaactagttgattattatcctgagatatgcgtatctctcacaaaaagtatgatgtattcattag |
107 |
Q |
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| T |
6145906 |
tttgaaccaaagagaacctaaaagaaagtgtggtcaaaactagttgattattatcctgagatatgcgtatctctcacaaaaagtatgatgtattcattag |
6145807 |
T |
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| Q |
108 |
ttttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctcttaccgatagaagtatcgaatcatacattgattacaatcttgttaag |
207 |
Q |
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| T |
6145806 |
ttttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctcttaccgatagaagtatcgaatcatacattgattatagtcttgttaaa |
6145707 |
T |
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| Q |
208 |
ggagatgaagttgg |
221 |
Q |
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|||||||| ||||| |
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| T |
6145706 |
ggagatgaggttgg |
6145693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 6188885 - 6188727
Alignment:
| Q |
63 |
ctgagatatgcgtatctctcacaaaaagtatgatgtattcattagttttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctctt |
162 |
Q |
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| T |
6188885 |
ctgagatatgcgtatctctcacaaaaagtacgatgtattcattagctttaggggagaggatacacgtacaaacttcactgcccagcttcatcaagctctt |
6188786 |
T |
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| Q |
163 |
accgatagaagtatcgaatcatacattgattacaatcttgttaagggagatgaagttgg |
221 |
Q |
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| T |
6188785 |
agcgatagaagtatcgaatcatacattgattacaatcttgttaaaggtgatgaggttgg |
6188727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 6180106 - 6179953
Alignment:
| Q |
68 |
atatgcgtatctctcacaaaaagtatgatgtattcattagttttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctcttaccga |
167 |
Q |
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| T |
6180106 |
atatgcgtatctctcacaaaaagtatgatttattcattagctttaggggagaggatacacgtacaaacttcactgcccagcttcatcgagctcttaccga |
6180007 |
T |
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| Q |
168 |
tagaagtatcgaatcatacattgattacaatcttgttaagggagatgaagttgg |
221 |
Q |
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| T |
6180006 |
tagtagtatcgaatcatacatcgattatagtctcgttaagggtgatgaagttgg |
6179953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 6098126 - 6098054
Alignment:
| Q |
78 |
ctctcacaaaaagtatgatgtattcattagttttaggggagaggatacacgtacaaacttcactgcccagctt |
150 |
Q |
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| T |
6098126 |
ctctcacaaaaagtatgatgtattcgttagcttcaggggagaggatacacgctcaaccttcactgcacagctt |
6098054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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