View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_high_75 (Length: 227)
Name: NF17265_high_75
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_high_75 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 46768040 - 46768231
Alignment:
| Q |
20 |
gaaacctaggactgtttgattttgacattgaaatgcttgtctgcaaagtggacaaggtttttgaattcattgtcatcaatgaaaccgttatgattggtgt |
119 |
Q |
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| T |
46768040 |
gaaacctaggactgtttgattttgacattgaaatgcttgtctgcaaagtggacaaggtttttgaattcattgtcatcaatgaaaccgttatgattggtgt |
46768139 |
T |
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| Q |
120 |
ctgcagcgtaaaagtctggacatatactccaagagacaaggagtcctcttgtaaggcgcacagcatgtcgcagttcctctttgctgattttg |
211 |
Q |
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| T |
46768140 |
ctgcagcgtaaaagtctggacatatactccaagagacaaggagtcctcttgtaaggcgcacagcatgtcgcagttcctctttgctgattttg |
46768231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 46772839 - 46773007
Alignment:
| Q |
36 |
tgattttgacattgaaatgcttgtctgcaaagtggacaaggtttttgaattcattgtcatcaatgaaaccgttatgattggtgtctgcagcgtaaaagtc |
135 |
Q |
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| T |
46772839 |
tgattttgacattgaaatgcttgtctgcaaagtggacaaggtttctgacttcattttcatcaatgaaaccgttgtggttggcgtctgcaaacttgaagtc |
46772938 |
T |
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| Q |
136 |
tgga-catatactccaagagacaaggagtcctcttgtaaggcgcacagcatgtcgcagttcctctttgct |
204 |
Q |
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| T |
46772939 |
tgtatcaca-actccaagatgcaaagagtcctctagcaaggcgcacagcatgtcgcagttcctctttgct |
46773007 |
T |
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