View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17265_low_1 (Length: 787)
Name: NF17265_low_1
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17265_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 5e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 600 - 776
Target Start/End: Complemental strand, 41538061 - 41537884
Alignment:
| Q |
600 |
ctatataattaacaaaaa-cagtttttatggaatattagtgtgagtggtacccggtctaacaaaagcaatttctatttttgtcgccagaatttggactgc |
698 |
Q |
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| T |
41538061 |
ctatataattaaaaaaaaacagtttttatggaatattagtgtgagtggtacccggtctaacaaaagcaatttctatttttgtcgccagaatttggactgc |
41537962 |
T |
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| Q |
699 |
atgtagatttactcgttctcctatggacgtgtttgatttatgttagttagtgcacgtctctttttgtattcatatcac |
776 |
Q |
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| T |
41537961 |
atgtagatttactcgttctcctatggacgtgtttgatttatgttagttagtgcacgtctctttttgtactcatatcac |
41537884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 374 - 515
Target Start/End: Complemental strand, 41538287 - 41538146
Alignment:
| Q |
374 |
agtcaagtatgctagtagctataaatgcatctcttgagatgaataagtgaaaattcgaggttcaaactcttacccttatatatcgcaatgtccttattaa |
473 |
Q |
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| T |
41538287 |
agtcaagtatgctagtagctataaatgcatctcttgagatgaataagtgaaaattcgaggttcaaactcttacccttacatatcgcaatgtccttattaa |
41538188 |
T |
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| Q |
474 |
ttaagatatgttcatgacgataattggattggatttatcaag |
515 |
Q |
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| T |
41538187 |
ttaagatatgttcatgaagataattggattggatttatcaag |
41538146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 41538849 - 41538686
Alignment:
| Q |
4 |
cctcaaccattcactcttcatgtaagctctacctgaaagcgctcaaaaaagtaattacttatttcctaacaatgaagtaatcatgtcgagattcgaccaa |
103 |
Q |
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| T |
41538849 |
cctcaaccattcactcttcatggaagctctacctgaaagcgctcaaaaaagtaattacatatttcctaacaatgaagtaatcatgtcgagatttgaccaa |
41538750 |
T |
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| Q |
104 |
gacctctgta---taatctgaactaaatacttatcaatttgaccaacctacattggttatcact |
164 |
Q |
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| T |
41538749 |
aacctctgtataataatctgaactaaatacttatcaatttgaccaacctacattggttatcact |
41538686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 41538423 - 41538349
Alignment:
| Q |
236 |
gagcaaatgtcgtctctagttccgtcactaagtttagagacatccaaattgattaccaattttatttattccgtc |
310 |
Q |
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| T |
41538423 |
gagcaaatgtcgtctctagttccatcactaagtttagagacatccaaattgattaccaattttatttattccgtc |
41538349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 466
Target Start/End: Original strand, 10629705 - 10629759
Alignment:
| Q |
413 |
tgaataagtgaa-aattcgaggttcaaactcttacccttatatatcgcaatgtcc |
466 |
Q |
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| T |
10629705 |
tgaacaagtgaagaattcgaggttcaacctccgacccttatatatcgcaatgtcc |
10629759 |
T |
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