View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_low_12 (Length: 557)

Name: NF17265_low_12
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_low_12
NF17265_low_12
[»] chr4 (2 HSPs)
chr4 (11-528)||(17248174-17248692)
chr4 (477-519)||(18330563-18330605)
[»] chr5 (20 HSPs)
chr5 (12-317)||(31187569-31187874)
chr5 (12-317)||(31225904-31226209)
chr5 (13-267)||(41333000-41333254)
chr5 (13-256)||(41311231-41311474)
chr5 (13-256)||(41325090-41325333)
chr5 (12-317)||(31177506-31177811)
chr5 (13-256)||(41317026-41317269)
chr5 (17-318)||(41287196-41287497)
chr5 (14-284)||(41367180-41367450)
chr5 (16-268)||(41305341-41305593)
chr5 (13-256)||(41329067-41329310)
chr5 (16-249)||(41337810-41338043)
chr5 (89-255)||(41369940-41370106)
chr5 (387-447)||(31187444-31187504)
chr5 (125-225)||(41329492-41329592)
chr5 (163-237)||(41311681-41311755)
chr5 (163-236)||(41333403-41333476)
chr5 (387-453)||(31177374-31177440)
chr5 (387-439)||(31226267-31226319)
chr5 (114-170)||(41342496-41342552)
[»] chr3 (3 HSPs)
chr3 (44-136)||(22971932-22972024)
chr3 (44-135)||(22946386-22946477)
chr3 (44-135)||(22986259-22986350)
[»] chr8 (1 HSPs)
chr8 (44-135)||(23610199-23610290)


Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 528
Target Start/End: Complemental strand, 17248692 - 17248174
Alignment:
Q  11 caaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| |||||||||||||||||||    
T  17248692 caaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagcccaattgatttcaaaggcatgaatttcgaatacataccatttggtg 17248593  T
Q  111 ctggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatga 210  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17248592 ctggaaggaggatttgtccgggcattgcatttggcatacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatga 17248493  T
Q  211 aatgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatat 310  Q
    |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  17248492 aatgaagaatgaagatctagatatgaccgagtcatttgggattacaataagaagaaaaaatgacctgtgcttgattccagctacacgtcgcccttaatat 17248393  T
Q  311 atgtattggctatg-nnnnnnnncttcacaatgagtttaatttccttcaactatttttcagccattagtaatttcaaaatgattgtgataaaagtagcaa 409  Q
    ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17248392 atgtattggctatgcaaaaaaaacttcacaatgagtttaatttccttcaactatttttcagccattagtaatttcaaaatgattgtgataaaagtagcaa 17248293  T
Q  410 ataacattcatttcttcaaagaaggtgtatgatattccaaataacagtcgtggttggtaataattgtttttgttgtgaaagacctgttactagatacttc 509  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17248292 ataacattcctttcttcaaagaaggtgtatgatattccaaataacagtcgtggttggtaataattgtttttgttgtgaaagacctgttactagatatttc 17248193  T
Q  510 atgggcagaggagcccata 528  Q
    |||||||||||||||||||    
T  17248192 atgggcagaggagcccata 17248174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 519
Target Start/End: Complemental strand, 18330605 - 18330563
Alignment:
Q  477 ttttgttgtgaaagacctgttactagatacttcatgggcagag 519  Q
    |||||||||||||||||| |||||||||| |||||||| ||||    
T  18330605 ttttgttgtgaaagacctattactagatatttcatgggtagag 18330563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 31187874 - 31187569
Alignment:
Q  12 aaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgc 111  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| | |||||| || |||||||| ||||||| ||||||||||||||||| || |||||    
T  31187874 aaaggtattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgc 31187775  T
Q  112 tggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaa 211  Q
    |||||| || || ||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |    
T  31187774 tggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatgga 31187675  T
Q  212 atgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatata 311  Q
    |||||||||||||| ||||||||||| || |||||||||||  || || |||||||| ||||||| ||||||| ||| | ||| ||||| ||||||||||    
T  31187674 atgaagaatgaagaactagatatgactgagtcatttgggatggctataggaagaaaacatgacctatgcttgattcctattactcgtcgtccttaatata 31187575  T
Q  312 tgtatt 317  Q
    ||||||    
T  31187574 tgtatt 31187569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 31225904 - 31226209
Alignment:
Q  12 aaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgc 111  Q
    ||||||||||||  |||||||||||||| |||||||| |||||| | |||||| || |||||||| ||||||| ||||||||||||||||| || |||||    
T  31225904 aaaggtattgggcagaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgc 31226003  T
Q  112 tggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaa 211  Q
    |||||| || || ||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |    
T  31226004 tggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatgga 31226103  T
Q  212 atgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatata 311  Q
    |||||||||||||| ||||||||||| || ||||||||| || || || |||||||||||||||||||||||| ||| |  || ||||| |||||||||     
T  31226104 atgaagaatgaagaactagatatgactgagtcatttgggctttctgtaggaagaaaaaatgacctgtgcttgattcctatcactcgtcgtccttaatatg 31226203  T
Q  312 tgtatt 317  Q
    ||||||    
T  31226204 tgtatt 31226209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 41333000 - 41333254
Alignment:
Q  13 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 112  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||| || |||| ||| |||||||| | || |||| ||||||||||||||||    
T  41333000 aaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagcacaattgaattcaaaggcacggacttcgaattcataccatttggtgct 41333099  T
Q  113 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 212  Q
    ||||||||||| ||||| || |||||||||| | |||| ||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||| |||    
T  41333100 ggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttgccactttgattggaagcttcccaataaaa 41333199  T
Q  213 tgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaa 267  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| || |||||||    
T  41333200 tgaagaatgaagaactagatatgaccgagtcatttgggattactgtaggaagaaa 41333254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 41311231 - 41311474
Alignment:
Q  13 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 112  Q
    |||||||||||||||||||||||| || |||||||| |||||| |||||||| || |||| ||| |||||||| | ||||||||||||||||||||||||    
T  41311231 aaggtattgggttgaagctgagagatttaaacctgagaggtttgttaatagcacaattgaattcaaaggcacggactttgaatacataccatttggtgct 41311330  T
Q  113 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 212  Q
    ||||||||||| ||||| || |||||||||| | |||| ||||||||| | ||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  41311331 ggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttaccggtttgattggaagcttcccaataaaa 41311430  T
Q  213 tgaagaatgaagatctagatatgaccgaatcatttgggattact 256  Q
    ||||||||||||| ||||||||| | || |||||||||||||||    
T  41311431 tgaagaatgaagaactagatatggctgagtcatttgggattact 41311474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 41325090 - 41325333
Alignment:
Q  13 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 112  Q
    ||||||||||||||| ||||| ||||| |||||||| |||||| |||||||  || |||||||| |||||||  | ||||||||||||||||||||||||    
T  41325090 aaggtattgggttgatgctgaaagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacagactttgaatacataccatttggtgct 41325189  T
Q  113 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 212  Q
    ||||| ||||| ||||| || |||||||||| |||||||||| |||| ||||||||||||   ||||||||||| ||||||||||||||||||||| |||    
T  41325190 ggaagaaggatgtgtcccggaattgcatttgccttacccaacgttgaattgcctcttgctagtttactttaccactttgattggaagcttcccaataaaa 41325289  T
Q  213 tgaagaatgaagatctagatatgaccgaatcatttgggattact 256  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  41325290 tgaagaatgaagaactagatatgaccgagtcatttgggattact 41325333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 31177811 - 31177506
Alignment:
Q  12 aaaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgc 111  Q
    ||||||||||||  |||||||||||||| ||||| || |||||| |||||||| || |||||||| |||| || || ||||| |||||||| || |||||    
T  31177811 aaaggtattgggcagaagctgagagttttaaacccgagaggtttgttaatagcacaattgatttcaaaggtacaaactttgagtacataccgttcggtgc 31177712  T
Q  112 tggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaa 211  Q
    |||||| || || ||||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |    
T  31177711 tggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatgga 31177612  T
Q  212 atgaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatata 311  Q
    |||||||||||||| ||||||||||| || ||||||||| || || ||  ||||||| ||||||| ||||||| ||| |  || ||||| | ||||||||    
T  31177611 atgaagaatgaagaactagatatgactgagtcatttgggcttgctgtagtaagaaaacatgacctatgcttgattcctataactcgtcgtctttaatata 31177512  T
Q  312 tgtatt 317  Q
    ||||||    
T  31177511 tgtatt 31177506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 41317026 - 41317269
Alignment:
Q  13 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 112  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||| || |||||||| |||||||| | || |||| ||||||||||||||||    
T  41317026 aaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagcccaattgatttcaaaggcacggacttcgaattcataccatttggtgct 41317125  T
Q  113 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 212  Q
    ||||||||||| |||||||| |||||||||| ||| |||||  ||||| ||||||||||| | |||||||| || |||||||||||||||||||||| ||    
T  41317126 ggaaggaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaa 41317225  T
Q  213 tgaagaatgaagatctagatatgaccgaatcatttgggattact 256  Q
    |||||||||||||  | |||||||| || |||||||||||||||    
T  41317226 tgaagaatgaagaattggatatgactgagtcatttgggattact 41317269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 17 - 318
Target Start/End: Original strand, 41287196 - 41287497
Alignment:
Q  17 tattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaa 116  Q
    |||||||| |||||||||| ||||||||| || |||||| |||||||  || |||||||| | |||||  | || |||||||||||||||||||||||||    
T  41287196 tattgggtcgaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaa 41287295  T
Q  117 ggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaa 216  Q
    ||||||| || ||||||||||| || ||| |||||||| ||||| | ||||||||| |||||||||| || |||||||||||||||| ||||| ||||||    
T  41287296 ggaggatgtgcccaggcattgccttcggcatacccaacgttgagcttcctcttgctgaattactttatcactttgattggaagcttctcaatggaatgaa 41287395  T
Q  217 gaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgagtccaactacacgtcgcccttaatatatgtat 316  Q
    |  |||||| || |||||||| || ||||||||||||||| || |||||||| ||||||| || || | ||| | ||||||| | ||||| ||| |||||    
T  41287396 gtgtgaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctattacacgttgtccttactatttgtat 41287495  T
Q  317 tg 318  Q
    ||    
T  41287496 tg 41287497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 41367180 - 41367450
Alignment:
Q  14 aggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctg 113  Q
    |||||||||||||| ||  ||||||| || ||||| || ||| ||||||||  | |||||||| |||||||  | |||||||||||||||||||||||||    
T  41367180 aggtattgggttgatgccaagagttttaagcctgagagatttcttaatagccgaattgatttcaaaggcacagactttgaatacataccatttggtgctg 41367279  T
Q  114 gaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaat 213  Q
    |||||||||| ||||  || |||||||||| |||||||||||| ||| | ||| | ||||| ||||||||||||||||||||||||||||| |||| |||    
T  41367280 gaaggaggatgtgtctgggtattgcatttgccttacccaacatagagctacctttagctcagttactttaccattttgattggaagcttccaaatggaat 41367379  T
Q  214 gaagaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttga 284  Q
    ||||||||||||  |||||||||| || ||||||||| || |  || |||||||| ||||| | |||||||    
T  41367380 gaagaatgaagaattagatatgacggagtcatttgggcttgcagtaggaagaaaacatgacttatgcttga 41367450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 41305341 - 41305593
Alignment:
Q  16 gtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctgga 115  Q
    |||||||||||||||||||||||| ||||| || |||||| ||||||||||| |||||||| |||||||  | |||||||||||||||||||||||||||    
T  41305341 gtattgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctgga 41305440  T
Q  116 aggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatga 215  Q
    |||||||| ||||| ||||||||||||| |||| | ||  ||||  | ||||||||| ||||||||||  | |||||||||||||||||||| | |||||    
T  41305441 aggaggatgtgtccgggcattgcatttgccttatcaaatgttgaacttcctcttgctgaattactttataactttgattggaagcttcccaacggaatga 41305540  T
Q  216 agaatgaagatctagatatgaccgaatcatttgggattactctaagaagaaaa 268  Q
       || |||| || ||||||||||| ||||||||| ||| | || ||||||||    
T  41305541 gccatcaagaacttgatatgaccgagtcatttgggcttagtgtaggaagaaaa 41305593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 41329067 - 41329310
Alignment:
Q  13 aaggtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgct 112  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||  || |||||||| |||||||| | || |||| ||||||||||||||||    
T  41329067 aaggtattgggttgaagctgagagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacggacttcgaattcataccatttggtgct 41329166  T
Q  113 ggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaa 212  Q
    ||||| ||||| |||||||| ||| |||||| | |||||||  ||||| ||||||||||| | |||||||| || |||||||||||||||||||||| ||    
T  41329167 ggaagaaggatgtgtccaggtatttcatttgccatacccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaa 41329266  T
Q  213 tgaagaatgaagatctagatatgaccgaatcatttgggattact 256  Q
    |||   || |||| || |||||||| || |  ||||||||||||    
T  41329267 tgagccatcaagaacttgatatgactgagttttttgggattact 41329310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 41337810 - 41338043
Alignment:
Q  16 gtattgggttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctgga 115  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||||| |||||||  | |||||||  ||||||||||||||||||    
T  41337810 gtattgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaattaataccatttggtgctgga 41337909  T
Q  116 aggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatga 215  Q
    || ||||| |||||||| |||||||||| ||| |||||  ||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||| |||||    
T  41337910 agaaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttgctttatcactttgattggaaacttccaaatggaatga 41338009  T
Q  216 agaatgaagatctagatatgaccgaatcatttgg 249  Q
       || |||| || |||||||| |||||||||||    
T  41338010 gccatcaagaacttgatatgactgaatcatttgg 41338043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 89 - 255
Target Start/End: Original strand, 41369940 - 41370106
Alignment:
Q  89 tttgaatacataccatttggtgctggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccatt 188  Q
    ||||||||||||||||||| ||| || |||||||| ||||||||||||   ||||||||||| ||| |||||||||||||||||   ||||||||||| |    
T  41369940 tttgaatacataccatttgatgcagggaggaggatgtgtccaggcattatgtttggcttacctaacgttgagttgcctcttgctagtttactttaccact 41370039  T
Q  189 ttgattggaagcttcccaatgaaatgaagaatgaagatctagatatgaccgaatcatttgggattac 255  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||    
T  41370040 ttgattggaagcttcccaatgaaatgaagaatgaagaattggatatgactgaatcatttgggattac 41370106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 447
Target Start/End: Complemental strand, 31187504 - 31187444
Alignment:
Q  387 aatgattgtgataaaagtagcaaataacattcatttcttcaaagaaggtgtatgatattcc 447  Q
    ||||||||||||||| |||||||||||||||||||||| | || |||||||||||| ||||    
T  31187504 aatgattgtgataaatgtagcaaataacattcatttctcccaataaggtgtatgatgttcc 31187444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 41329492 - 41329592
Alignment:
Q  125 tgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaag 224  Q
    |||||| ||||||||||||| ||| ||||  ||||  ||| ||||||| ||||||||||  | |||||||| |||||| |||||| |||||| |||||||    
T  41329492 tgtccaagcattgcatttggtttagccaatgttgaactgcgtcttgctgaattactttatgactttgattgaaagctttccaatggaatgaataatgaag 41329591  T
Q  225 a 225  Q
    |    
T  41329592 a 41329592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 41311681 - 41311755
Alignment:
Q  163 gcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagatatgac 237  Q
    |||||||||| ||||| ||||  | |||||||| ||||||||||||| |||||| |||||||| || ||||||||    
T  41311681 gcctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaataatgaagaacttgatatgac 41311755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 41333403 - 41333476
Alignment:
Q  163 gcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagatatga 236  Q
    |||||||||| ||||| ||||  | |||||||| ||||||||||||| |||||| |||||||| || |||||||    
T  41333403 gcctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaataatgaagaacttgatatga 41333476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 31177440 - 31177374
Alignment:
Q  387 aatgattgtgataaaagtagcaaataacattcatttcttcaaagaaggtgtatgatattccaaataa 453  Q
    ||||||||| ||||| |||||||||||||||||||||| | || | | |||||||| |||| |||||    
T  31177440 aatgattgtaataaatgtagcaaataacattcatttctcccaatatgttgtatgatgttcctaataa 31177374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 31226267 - 31226319
Alignment:
Q  387 aatgattgtgataaaagtagcaaataacattcatttcttcaaagaaggtgtat 439  Q
    ||||||||||||||| | |||||||| ||||||||||| | || |||||||||    
T  31226267 aatgattgtgataaatggagcaaataccattcatttctcccaataaggtgtat 31226319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 41342496 - 41342552
Alignment:
Q  114 gaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttg 170  Q
    |||||||||| | | ||||||||| ||||||||||| |||| |||||||||| ||||    
T  41342496 gaaggaggatgtcttcaggcattgtatttggcttactcaacgttgagttgccacttg 41342552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 22972024 - 22971932
Alignment:
Q  44 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcatt 136  Q
    |||||||| ||| || |||| ||  |||||||| |||| || |||||||| ||||| ||||||||||||||||| || |||||||||||||||    
T  22972024 cctgaaagatttattgatagttctcttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaagaatttgtccaggcatt 22971932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 22946477 - 22946386
Alignment:
Q  44 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 135  Q
    |||||||| ||| || |||| || ||||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |||||||| |||||    
T  22946477 cctgaaagatttattgatagttctgttgatttcaaaggaacaaattttgagtacattccatttggtgccggaaggagaatttgtccgggcat 22946386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 22986350 - 22986259
Alignment:
Q  44 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 135  Q
    ||||| |||||| || |||| ||  |||||||| |||| || |||||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  22986350 cctgagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaaggagaatttgtcctggcat 22986259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 23610290 - 23610199
Alignment:
Q  44 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 135  Q
    |||||||||||| || |||||||  ||||||||  ||| || |||||||| | ||| |||||||||||||| ||||| |||||||| |||||    
T  23610290 cctgaaaggtttattgatagctctattgatttctcaggaactaattttgagttcattccatttggtgctggtaggagaatttgtcccggcat 23610199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University