View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17265_low_15 (Length: 530)

Name: NF17265_low_15
Description: NF17265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17265_low_15
NF17265_low_15
[»] chr2 (6 HSPs)
chr2 (1-118)||(26679159-26679276)
chr2 (1-116)||(10289745-10289860)
chr2 (114-147)||(17646523-17646556)
chr2 (114-147)||(18739753-18739786)
chr2 (112-152)||(12562482-12562522)
chr2 (12-108)||(32991192-32991288)
[»] chr6 (4 HSPs)
chr6 (1-118)||(25035881-25035998)
chr6 (1-42)||(5696109-5696150)
chr6 (44-110)||(17110846-17110912)
chr6 (114-147)||(2710356-2710389)
[»] chr5 (2 HSPs)
chr5 (114-350)||(39592695-39592926)
chr5 (444-493)||(39592950-39592999)
[»] chr7 (2 HSPs)
chr7 (1-115)||(34792378-34792492)
chr7 (31-108)||(1365193-1365270)
[»] chr1 (5 HSPs)
chr1 (17-114)||(30650670-30650767)
chr1 (29-116)||(17083667-17083754)
chr1 (112-147)||(50729503-50729538)
chr1 (114-152)||(41614717-41614755)
chr1 (67-108)||(21528555-21528596)
[»] scaffold0131 (1 HSPs)
scaffold0131 (67-108)||(4258-4299)
[»] scaffold0029 (1 HSPs)
scaffold0029 (67-108)||(134563-134604)
[»] scaffold0002 (2 HSPs)
scaffold0002 (67-108)||(312390-312431)
scaffold0002 (67-108)||(327844-327885)
[»] chr4 (1 HSPs)
chr4 (67-108)||(8654782-8654823)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26679159 - 26679276
Alignment:
Q  1 ccaactgaacatttgagcaacagtagccaatttattttcagacaaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  26679159 ccaactgaacatttgagcaacagtagccaatttattttcagacaaatcatataaacgactaaacctgacacaaaaaggaacatcaccaacccacctatcc 26679258  T
Q  101 aaccaaaataaggtgtta 118  Q
    ||||||||||| ||||||    
T  26679259 aaccaaaataaagtgtta 26679276  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10289860 - 10289745
Alignment:
Q  1 ccaactgaacatttgagcaacagtagccaatttattttcagacaaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  10289860 ccaactgaacatttgagcaacagtagccaatttattttcagacaaatcatataaacgactaaacctgactcaaaaaggaacatcaccaacccacctatcc 10289761  T
Q  101 aaccaaaataaggtgt 116  Q
    ||||||||||| ||||    
T  10289760 aaccaaaataaagtgt 10289745  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 17646556 - 17646523
Alignment:
Q  114 tgttaatatattttatttttatgtcttcaaaaaa 147  Q
    ||||||||||||| ||||||||||||||||||||    
T  17646556 tgttaatatatttcatttttatgtcttcaaaaaa 17646523  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 18739786 - 18739753
Alignment:
Q  114 tgttaatatattttatttttatgtcttcaaaaaa 147  Q
    |||||||||||| |||||||||||||||||||||    
T  18739786 tgttaatatattctatttttatgtcttcaaaaaa 18739753  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 12562522 - 12562482
Alignment:
Q  112 ggtgttaatatattttatttttatgtcttcaaaaaatatat 152  Q
    ||||||||||||||| ||||||||||||||| |||| ||||    
T  12562522 ggtgttaatatatttcatttttatgtcttcagaaaaaatat 12562482  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 32991288 - 32991192
Alignment:
Q  12 tttgagcaacagtagccaatttattttcagacaaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatccaaccaaaa 108  Q
    |||||||||| || |||| ||||||||  || || ||||| ||||||  |||||| |||   ||||||||  |||| ||||||||||||||||||||    
T  32991288 tttgagcaacggtcgccattttattttttgataactcatacaaacggcgaaacctaacattcaaaggaaccacacctacccacctatccaaccaaaa 32991192  T

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Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 25035998 - 25035881
Alignment:
Q  1 ccaactgaacatttgagcaacagtagccaatttattttcagacaaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||    
T  25035998 ccaactgaacatttgagcaacagtagccaatttattttcagacaaatcatataaacgactaaacctgacacaagaaggaacatcatcaacccacctatcc 25035899  T
Q  101 aaccaaaataaggtgtta 118  Q
    ||||||||||| ||||||    
T  25035898 aaccaaaataaagtgtta 25035881  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5696150 - 5696109
Alignment:
Q  1 ccaactgaacatttgagcaacagtagccaatttattttcaga 42  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  5696150 ccaactgaacatttgagcaacaatagtcaatttattttcaga 5696109  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 17110912 - 17110846
Alignment:
Q  44 aaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatccaaccaaaata 110  Q
    |||||| ||||||||  ||||||  |||||||||| ||||| |||||||||||||||  ||||||||    
T  17110912 aaatcaaataaacggcgaaacctatcacaaaaagggacatctccaacccacctatcccgccaaaata 17110846  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 2710356 - 2710389
Alignment:
Q  114 tgttaatatattttatttttatgtcttcaaaaaa 147  Q
    ||||||||||||| ||||||||||||||||||||    
T  2710356 tgttaatatatttcatttttatgtcttcaaaaaa 2710389  T

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Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 114 - 350
Target Start/End: Original strand, 39592695 - 39592926
Alignment:
Q  114 tgttaatatattttatttttatgtcttcaaaaaatatatatactatactattgatgtgttttagccccgtaacnnnnnnnnntatactattgatgtgaaa 213  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||          | | |||  ||||||||    
T  39592695 tgttaatatatttcatttttatatcttcaaaaaatatatatactatactattgatgtgttttagccttgtaacaaaaaa----aaaatatacatgtgaaa 39592790  T
Q  214 ctgtacgtaatgttagtattaatatttgttagattgtgaaaatttcaacttgtctatgatagcttggtggtaaatctgtaaacatttgggttgaatgtgt 313  Q
    || |||||||||||| ||||||||||||||||||||||||||| ||||||||   |||||||||| |||||||| | | || ||||||||||| |||||     
T  39592791 ctatacgtaatgttaatattaatatttgttagattgtgaaaatatcaacttgctcatgatagcttcgtggtaaacccgaaagcatttgggttgtatgtgc 39592890  T
Q  314 atggttcgatttccaccaggttcatatcaaatttttt 350  Q
    || |||| ||| ||||||||| |||||||||||||||    
T  39592891 at-gttcaattcccaccaggtccatatcaaatttttt 39592926  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 39592950 - 39592999
Alignment:
Q  444 aataaaaaagtcagcaaataagggagtgacacgtggtgcattctggcagt 493  Q
    ||||||||||||||||||| ||||||||||||| || ||||| |||||||    
T  39592950 aataaaaaagtcagcaaatcagggagtgacacgcggcgcattttggcagt 39592999  T

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Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 34792492 - 34792378
Alignment:
Q  1 ccaactgaacatttgagcaacagtagccaatttattttcagacaaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatcc 100  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||   |||||||| |||||||||| |||||||||||| |||||||     
T  34792492 ccaaccgaacatttgagcaacaatagccattttattttcagacaaatcatataaactactaaacctgtcacaaaaaggcacatcaccaaccaacctatca 34792393  T
Q  101 aaccaaaataaggtg 115  Q
    | |||||||||||||    
T  34792392 acccaaaataaggtg 34792378  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 1365270 - 1365193
Alignment:
Q  31 tttattttcagacaaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatccaaccaaaa 108  Q
    ||||||||| || |||||| ||||||| | |||| || | | || |||||||||||| |||||| |||||||||||||    
T  1365270 tttattttctgataaatcaaataaacgatgaaacttgtcccgaagaggaacatcacccacccacatatccaaccaaaa 1365193  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 30650767 - 30650670
Alignment:
Q  17 gcaacagtagccaatttattttcagacaaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatccaaccaaaataaggt 114  Q
    |||||| |||||| |||||||||||||||||||||||||||  |||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||    
T  30650767 gcaacattagccattttattttcagacaaatcatataaacgactaaacctgtcacaaaaaggaacatcgccaacccacttatccacccaaaataaggt 30650670  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 17083754 - 17083667
Alignment:
Q  29 aatttattttcagacaaatcatataaacggttaaacctgacacaaaaaggaacatcaccaacccacctatccaaccaaaataaggtgt 116  Q
    |||||||| |||||||||||| |||| |||  ||| | ||||  |||||||| ||| |||||||||||||| ||||||||||| ||||    
T  17083754 aatttattatcagacaaatcaaataaccggcgaaagcggacatgaaaaggaatatccccaacccacctatcaaaccaaaataaagtgt 17083667  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 50729538 - 50729503
Alignment:
Q  112 ggtgttaatatattttatttttatgtcttcaaaaaa 147  Q
    ||||||||||||||| ||||||||||||||||||||    
T  50729538 ggtgttaatatatttcatttttatgtcttcaaaaaa 50729503  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 41614717 - 41614755
Alignment:
Q  114 tgttaatatattttatttttatgtcttcaaaaaatatat 152  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  41614717 tgttaatatattctatttttatgtcttcaaaaaaaatat 41614755  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 21528555 - 21528596
Alignment:
Q  67 gacacaaaaaggaacatcaccaacccacctatccaaccaaaa 108  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  21528555 gacacaaaaaggaacatcccctaaccacctatccaaccaaaa 21528596  T

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Target: scaffold0131 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 4299 - 4258
Alignment:
Q  67 gacacaaaaaggaacatcaccaacccacctatccaaccaaaa 108  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  4299 gacacaaaaaggaacatcccctaaccacctatccaaccaaaa 4258  T

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Target: scaffold0029 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 134604 - 134563
Alignment:
Q  67 gacacaaaaaggaacatcaccaacccacctatccaaccaaaa 108  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  134604 gacacaaaaaggaacatcccctaaccacctatccaaccaaaa 134563  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 312431 - 312390
Alignment:
Q  67 gacacaaaaaggaacatcaccaacccacctatccaaccaaaa 108  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  312431 gacacaaaaaggaacatcccctaaccacctatccaaccaaaa 312390  T

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Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 327885 - 327844
Alignment:
Q  67 gacacaaaaaggaacatcaccaacccacctatccaaccaaaa 108  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  327885 gacacaaaaaggaacatcccctaaccacctatccaaccaaaa 327844  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 8654823 - 8654782
Alignment:
Q  67 gacacaaaaaggaacatcaccaacccacctatccaaccaaaa 108  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  8654823 gacacaaaaaggaacatcccctaaccacctatccaaccaaaa 8654782  T

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